DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rgl and LOC103909384

DIOPT Version :9

Sequence 1:NP_001261814.1 Gene:Rgl / 44115 FlyBaseID:FBgn0026376 Length:973 Species:Drosophila melanogaster
Sequence 2:XP_009293336.2 Gene:LOC103909384 / 103909384 -ID:- Length:759 Species:Danio rerio


Alignment Length:812 Identity:265/812 - (32%)
Similarity:389/812 - (47%) Gaps:160/812 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   196 GEEHEKNAIFTVYLKKVRYHRPTPTASNDSDDEISHLEWETVRVRFVKAATLARLVEALATDDGE 260
            |||.|:.|:|::.::||:.::     |:.|..:..|.:..|.::|.:||.||.||||.:.|....
Zfish    16 GEEVEEGAVFSITVRKVQVYQ-----SSSSRGQQQHSDSHTCKLRSIKAGTLERLVENMLTAFRG 75

  Fly   261 LESTFINVFLSTYRTFSTPKQVLSLLTQRYDALHEKHLEELEQAQQNGQVMDPAYDPHASIHEQH 325
            .:||::.:||.|||||:|.||||.||..||..|         |.|....|.....|....:    
Zfish    76 NDSTYVTIFLCTYRTFATTKQVLDLLLNRYAKL---------QQQPGPDVRRMTSDERTEL---- 127

  Fly   326 KKTLVSALHVWLDGFPED-WHEDN---LQQILAFATKRLKRSDLHIKVLNRLERLIKQSLYGNGG 386
            :.|:.|.|..|||.:.|| |....   |::::.:.......|||..:..|.|...          
Zfish   128 RNTISSILGAWLDQYSEDFWKPPEYSCLRRLILYLQINFPGSDLERRACNLLSHF---------- 182

  Fly   387 GSGGSENNGHSWLSAARSQQMQQ----FMIPTHYGSSYDLTDQFNGMYLSPMGHGPIYRGPTHFL 447
                     |..|..|....::|    |.:....|...:..|     :||               
Zfish   183 ---------HRRLQHAEPDLLEQGCCAFSLLEENGFEEERPD-----FLS--------------- 218

  Fly   448 QAFRFPHVPVRHFAEQLTRMDTELFKRLIPHQCLGHTWARRDSGGSE----TVVATINQFNAVLF 508
                |....|   |||.|.||.|||||::|:.|||..|::||..|.|    |:.||::|||.|..
Zfish   219 ----FDPTVV---AEQFTLMDAELFKRVVPYHCLGSIWSQRDKKGKEHLAPTIRATVSQFNRVTN 276

  Fly   509 RVVSSILIDR-LKPQERALNISRWIDIAQELRMLKNFSSLKAIISALNSNSIYRLSKIWEVLPKE 572
            ..:::.|.|| ||...||..:..||.:|:|.|:|||||||:||:|||..|.::||.|.|:.:.:|
Zfish   277 CAIATCLSDRTLKHTHRARILEHWIQVARECRILKNFSSLRAILSALQCNPVHRLKKTWDEVSRE 341

  Fly   573 RMEVFTELANICSEDNNAWTLREVLKREGTAK------NPDPGSDHSDRHLQKLILNLGTQTSHG 631
            .:.:|.||:.|.|::||....||:|.:|||:|      ||........|.|..:         .|
Zfish   342 NLRIFQELSEIFSDENNHSLSRELLIKEGTSKFATLEINPKRAQKRQQRDLTVM---------QG 397

  Fly   632 TIPYLGTFLTDLTMIHTANPDYLTENKLINFDKKRKEFEVLAQIKLLQGAANTYNLQADALFDHW 696
            ||||||||||||.|:.||..||| :..||||:|:||||||:|||||||.|.|.||.|..:.|..|
Zfish   398 TIPYLGTFLTDLVMMDTAMKDYL-DGGLINFEKRRKEFEVIAQIKLLQLACNNYNFQRVSGFSAW 461

  Fly   697 FNSMPVFDEREAFELSCRLEPPPPAPRKSVVSTNTSLTNTTASSTASIMGHRKTD---------S 752
            ..|:....|.|::..||.:||           .:.|.:||..:..:|.:..|.:|         .
Zfish   462 LCSVEKLSEAESYSQSCEIEP-----------LSESASNTLRAKKSSGIMKRWSDRQPVCVGEAG 515

  Fly   753 IHSNSSSGAGSQF------YCELNSSTSSRHNSLDRDVHHQHASLMSASSSVS-----NLSL--D 804
            ..|:|.|.....|      .|....|.....:|:         |:.||.||.|     |:|.  :
Zfish   516 CSSSSGSSHSKSFDQLRFPVCVSGGSVCDGGDSV---------SVTSAGSSSSDVEEVNISYTSE 571

  Fly   805 SSNSGGRQSGKLTHSQSMGNGLKSHGNGTTNGGSPHINAQLVQPSSGTPHSA------------- 856
            |.::..|:..:.|...|:.......|:|:::..|..:::..|..|.....||             
Zfish   572 SPDAPERKFWESTSLSSLDASALGSGSGSSSASSSSVSSTPVSVSRSHKRSASGVSSYSSLSLPL 636

  Fly   857 -----PDFYIIRVTYETDNIELDGIVLYKSIMLGNNERTPQVIRNAMLKLGLE-DDPDRFTLAQ- 914
                 .|..||||:.:.||..     :||||::.:.::||.|:|.||:|..|: :..:.:.|.| 
Zfish   637 YNQQVDDCCIIRVSLDVDNGN-----MYKSILVTSQDKTPAVVRKAMVKHNLDRERAEDYELVQK 696

  Fly   915 VLPDKELVMPKNANVYYAVNTNYNLNFILRPR 946
            :..:|||.:|.||||:||:|:..|.:|:|:.|
Zfish   697 ISEEKELKIPDNANVFYAMNSTANYDFVLKKR 728

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RglNP_001261814.1 REM 246..378 CDD:100121 45/135 (33%)
RasGEF 454..719 CDD:214539 127/275 (46%)
RalGDS_RA 858..946 CDD:176351 35/89 (39%)
LOC103909384XP_009293336.2 RasGEFN 53..179 CDD:214571 47/138 (34%)
RasGEF 216..479 CDD:238087 127/294 (43%)
RalGDS_RA 643..728 CDD:176351 35/89 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D116220at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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