DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rgl and Gm3402

DIOPT Version :9

Sequence 1:NP_001261814.1 Gene:Rgl / 44115 FlyBaseID:FBgn0026376 Length:973 Species:Drosophila melanogaster
Sequence 2:XP_011239298.1 Gene:Gm3402 / 100041548 MGIID:3781580 Length:319 Species:Mus musculus


Alignment Length:104 Identity:22/104 - (21%)
Similarity:43/104 - (41%) Gaps:26/104 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   266 INVFLSTYRTFSTPKQVLSLLTQRYDALHEKHLEELEQAQQNGQVMDPAYDPHASIHEQHKKTLV 330
            |.:||..|||:::..:||.||.:.|                      .::.|.....:|.|:.:.
Mouse    89 ITIFLGVYRTYASTWEVLDLLMRTY----------------------ASFRPDCIKDQQTKRAIF 131

  Fly   331 SALHVWLDGFPEDWHEDN----LQQILAFATKRLKRSDL 365
            ..|..|...:|:|::|..    ::|.:.:....:..||:
Mouse   132 RFLFGWFKKYPQDFYESPDLAVVRQFIDYVKHNVPSSDV 170

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RglNP_001261814.1 REM 246..378 CDD:100121 22/104 (21%)
RasGEF 454..719 CDD:214539
RalGDS_RA 858..946 CDD:176351
Gm3402XP_011239298.1 REM 89..177 CDD:100121 22/104 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3629
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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