Protein Alignment Optix and so

DIOPT Version :10

• Sequence 1: NP_001260793.1
• Gene: Optix / 44108
• FlyBaseID: FBgn0025360
• Length: 492
• Species: Drosophila melanogaster
• Sequence 2: NP_476733.1
• Gene: so / 35662
• FlyBaseID: FBgn0003460
• Length: 416
• Species: Drosophila melanogaster
• Alignment Length: 361
• Identity: 145/361 - (40%)
• Similarity: 195/361 - (54%)
• Gaps: 80/361 - (22%)

  Fly    32 VPTLAFSAAQVEIVCKTLEDSGDIERLARFLWSLPVALPNMHEILNC------EAVLRARAVVAY 90
            :|:..|:..||..||:.|:.:|:||||.|||||||          .|      |:||:|:||||:
  Fly    98 LPSFGFTQEQVACVCEVLQQAGNIERLGRFLWSLP----------QCDKLQLNESVLKAKAVVAF 152

  Fly    91 HVGNFRELYAIIENHKFTKASYGKLQAMWLEAHYIEAEKLRGRSLGPVDKYRVRKKFPLPPTIWD 155
            |.|.::|||.::|:|.|:..::.||||:||:|||:||||||||.||.|.|||||:|||||.||||
  Fly   153 HRGQYKELYRLLEHHHFSAQNHAKLQALWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWD 217

  Fly   156 GEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAKATGLNPTQVGNWFKNRRQRDRAAAAKNRI 220
            ||:.::||||::||:||:||..:|||:|.:||:||:||||..|||.|||||||||||||..|
  Fly   218 GEETSYCFKEKSRSVLRDWYSHNPYPSPREKRDLAEATGLTTTQVSNWFKNRRQRDRAAEHK--- 279

  Fly   221 QHSQNSSGMGCRSRRADGAASPTPSDSSDSDISLGTHSPVPSS------LQLQHSPGSTS---NG 276
                            ||:......|||......|:..|..|:      .|.|||||::|   ||
  Fly   280 ----------------DGSTDKQHLDSSSDSEMEGSMLPSQSAQHQQQQQQQQHSPGNSSGNNNG 328

  Fly   277 ANDR-------EESLSVDDDKPRDLSGSLPLPLSLPLPLASPTHTPPQLPPGYGGGAGAGPGGPL 334
            .:.:       |:.|.....:|...|.           :|:...|...     |||.|.|.....
  Fly   329 LHQQQLQHVAAEQGLQHHPHQPHPASN-----------IANVAATKSS-----GGGGGGGVSAAA 377

  Fly   335 TGPGCLPPFKLDAA-------------TSLFSAGCY 357
            .....:||.....|             |:::..|.|
  Fly   378 AAQMQMPPLTAAVAYSHLHSVMGAMPMTAMYDMGEY 413

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Optix	NP_001260793.1	SIX1_SD	37..150	CDD:465293	63/118 (53%)
		homeodomain	158..206	CDD:238039	28/47 (60%)
so	NP_476733.1	SIX1_SD	103..212	CDD:465293	63/118 (53%)
		homeodomain	223..274	CDD:238039	34/50 (68%)