DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Optix and Six4

DIOPT Version :9

Sequence 1:NP_001260793.1 Gene:Optix / 44108 FlyBaseID:FBgn0025360 Length:492 Species:Drosophila melanogaster
Sequence 2:XP_006240269.1 Gene:Six4 / 299138 RGDID:1306726 Length:775 Species:Rattus norvegicus


Alignment Length:552 Identity:181/552 - (32%)
Similarity:265/552 - (48%) Gaps:111/552 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 AVGPTEGKQPPSESFSPTHHQIIAPSPILAVPTLAFSAAQVEIVCKTLEDSGDIERLARFLWSLP 66
            |.|..:..|..||...  .||..|    .|.|.||||...|..||:.|:..|:::||||||||||
  Rat    72 AAGAADQVQLHSELLG--RHQHAA----TAQPPLAFSPDHVACVCEALQQGGNLDRLARFLWSLP 130

  Fly    67 VALPNMHEIL-NCEAVLRARAVVAYHVGNFRELYAIIENHKFTKASYGKLQAMWLEAHYIEAEKL 130
                 ..::| ..|::|:|||:||:|.|.:.|||:|:|:|.|..|::..||.:|.:|.|.|||:.
  Rat   131 -----QSDLLRGNESLLKARALVAFHQGIYPELYSILESHSFESANHPLLQQLWYKARYTEAERA 190

  Fly   131 RGRSLGPVDKYRVRKKFPLPPTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPTKKRELAKATGL 195
            |||.||.|||||:|:|||||.||||||:..:||||::|:.|:|.|.|:.||:|.:||.|||.|||
  Rat   191 RGRPLGAVDKYRLRRKFPLPRTIWDGEETVYCFKEKSRNALKELYKQNRYPSPAEKRHLAKITGL 255

  Fly   196 NPTQVGNWFKNRRQRDRAAAAKNRIQHSQNSSGMGCRSRRADGAASPTP-SDSSD--SDISLGTH 257
            :.|||.|||||||||||..:.......|..:......|.:.....||.| |.:||  :::||.:|
  Rat   256 SLTQVSNWFKNRRQRDRNPSETQSKSESDGNPSTEDESSKGHEDLSPHPLSGASDGVTNLSLSSH 320

  Fly   258 -SPV-------------PSSLQLQHS--PGSTS------------------NGAN-DREESLSVD 287
             .||             .|.:.|..|  |.|||                  ||.| ...:::|: 
  Rat   321 MEPVYMQQIGNAKISLSSSGVLLNGSLVPASTSPVFLNGNSFIQGHNGVILNGLNVGNTQTVSL- 384

  Fly   288 DDKPRDLSGSLPLPLSLPLPLASPTHTPPQLPPGYGGGAGA------GPGGPLTGPGCLP--PFK 344
             :.|:..|.::...:::...|.|.:....:..........:      .|..|::.||.:|  ..|
  Rat   385 -NPPKMSSNTVGNGIAMTDILGSTSQDVKEFKVLQSSAVNSAATTSYSPSAPVSFPGLIPCTEVK 448

  Fly   345 LDAATSLFSA-GCYLQSFSNLKEMSQQFPIQPIVLRPHPQLPQSLA----LNGASGGPPLHHPAY 404
            .:...::.|. |..:.:|:...:::|...:         |:|.|.|    |||:.|..||..|..
  Rat   449 REGVQTVASQDGGSVVTFTTPVQINQYGIV---------QIPNSGANGQFLNGSIGFSPLQLPPV 504

  Fly   405 AAAYSVECVPGGHGPPHPPPKLRINSPEKLNSTAVAAAASVGGGGGNQHHE-------PTTTGY- 461
            :.:.|     .||        |.:.......||..:.:|:|      ||.:       |:...| 
  Rat   505 SVSAS-----QGH--------LSVTPSTSDGSTFTSESATV------QHGKLFLSPLTPSAVVYT 550

  Fly   462 -HHSGQLM-------LHR--PFSTSPELKHSA 483
             .:|||.:       |.|  .||....:.|:|
  Rat   551 VPNSGQTVGAVKQEGLERGLVFSQLMPVNHNA 582

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OptixNP_001260793.1 SIX1_SD 37..150 CDD:293483 57/113 (50%)
homeodomain 158..206 CDD:238039 26/47 (55%)
Six4XP_006240269.1 SIX1_SD 101..210 CDD:293483 57/113 (50%)
homeodomain 221..275 CDD:238039 34/53 (64%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166352064
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0775
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.740

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