DRSC/TRiP Functional Genomics Resources

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Protein Alignment Optix and six2

DIOPT Version :10

Sequence 1:NP_001260793.1 Gene:Optix / 44108 FlyBaseID:FBgn0025360 Length:492 Species:Drosophila melanogaster
Sequence 2:NP_001093745.1 Gene:six2 / 100101784 XenbaseID:XB-GENE-481504 Length:289 Species:Xenopus tropicalis


Alignment Length:371 Identity:152/371 - (40%)
Similarity:206/371 - (55%) Gaps:106/371 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 VPTLAFSAAQVEIVCKTLEDSGDIERLARFLWSLPVALPNMHEILNCEAVLRARAVVAYHVGNFR 96
            :||..|:..||..||:.|:..|:||||.||||||| |..::|:   .|:||:|:||||:|.||||
 Frog     4 LPTFGFTQEQVACVCEVLQQGGNIERLGRFLWSLP-ACEHLHK---NESVLKAKAVVAFHRGNFR 64

  Fly    97 ELYAIIENHKFTKASYGKLQAMWLEAHYIEAEKLRGRSLGPVDKYRVRKKFPLPPTIWDGEQKTH 161
            |||.|:|.|:|:..::.|||.:||:||||||||||||.||.|.|||||:|||||.:|||||:.::
 Frog    65 ELYKILEGHQFSPHNHPKLQQLWLKAHYIEAEKLRGRPLGAVGKYRVRRKFPLPRSIWDGEETSY 129

  Fly   162 CFKERTRSLLREWYLQDPYPNPTKKRELAKATGLNPTQVGNWFKNRRQRDRAAAAKNRIQHSQNS 226
            ||||::||:|||||..:|||:|.:|||||:||||..|||.|||||||||||||.||.|.:.:   
 Frog   130 CFKEKSRSVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKERYEEN--- 191

  Fly   227 SGMGCRSRRADGAASPTPSDSSDSDISLGTHSPVPSSLQLQHSPGSTSNGANDREESLSVDDDKP 291
                              :::|:|:    :|:|:.:|:    :.|.|..|        |.|||| 
 Frog   192 ------------------NENSNSN----SHNPLSTSM----NGGKTVLG--------SSDDDK- 221

  Fly   292 RDLSGSLPLPLSLPLPLASPTHTPPQLPPGYGGGAGAGPGGPLTG-PGCLPPFKLDAATSLFSAG 355
                          .|..:|.||            .:.|...|:| ||                 
 Frog   222 --------------TPSGTPDHT------------SSSPALLLSGNPG----------------- 243

  Fly   356 CYLQSFSNLKEMSQQFPIQPIVLRPHPQLPQSLALNGASGGPPLHH 401
              ||:...:.               |||.|.::.::.|.   |:||
 Frog   244 --LQALHGMS---------------HPQGPSAIPVSAAD---PMHH 269

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OptixNP_001260793.1 SIX1_SD 37..150 CDD:465293 68/112 (61%)
homeodomain 158..206 CDD:238039 30/47 (64%)
six2NP_001093745.1 SIX1_SD 9..118 CDD:465293 68/112 (61%)
homeodomain 129..180 CDD:238039 36/50 (72%)

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