DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Patj and Pard3b

DIOPT Version :9

Sequence 1:NP_477342.1 Gene:Patj / 44100 FlyBaseID:FBgn0067864 Length:871 Species:Drosophila melanogaster
Sequence 2:XP_006496361.1 Gene:Pard3b / 72823 MGIID:1919301 Length:1238 Species:Mus musculus


Alignment Length:931 Identity:204/931 - (21%)
Similarity:322/931 - (34%) Gaps:349/931 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 KKGIDESDDPKLQMQTAESLSTILGILQDPVFR-------TIVHVQDSLSELNAQLAQHPSMLPN 75
            ::|:.:.::..:::...|.|.......|| |||       .|:||                :||.
Mouse   279 QEGLFQENECIVKINNVELLDKTFAQAQD-VFRQAMKSPSVILHV----------------LLPQ 326

  Fly    76 D---FDIDVAGNLVLSLNGGEVMYDFDEQRSSSHSHSAPGSPDKSG-----------GVGEEPRP 126
            :   ::..|.|.|.:          |.....:|.:.:||.:..|.|           ..|||| .
Mouse   327 NREQYEKSVIGPLNI----------FGNNDGASRTKAAPPARGKPGLKAVHLTRASSPEGEEP-A 380

  Fly   127 QSQNSKGAGVADL---------------YATDYAQIQAIELVNDGTGLGFGIIGARNSG------ 170
            ..|.||...|..|               .:...|:...|:|.....||||.:: .|:|.      
Mouse   381 SPQQSKSPRVPRLGRKPSSPSLSPLMGFGSKKNAKKIKIDLKKGPEGLGFTVV-TRDSSIHGPGP 444

  Fly   171 VIVKTILPGGVADKDGRLRSGDHILQIGDVNLHEMVSEQVAAVLR--QSGTHVRLVVARPVEQSV 233
            :.||.|||.|.|.|||||:|||.||::...::.....|::.|:||  :.|..|.||:||      
Mouse   445 IFVKNILPKGAAVKDGRLQSGDRILEVNGRDVTGRTQEELVAMLRSTKQGETVSLVIAR------ 503

  Fly   234 PTPQYALEPGTAVVPTRVLVDPAELERYLISTGYPEIFGESSTASTPQTTTEDDRFVYRGETSML 298
                   :.|:.:        |.||:      |.|:.:.                          
Mouse   504 -------QEGSFL--------PRELK------GEPDCYA-------------------------- 521

  Fly   299 IDPNIDLEELLALPETEKLQVEL---KKDANGLGITIAGYVCEKEELS-GIFVKSVSPGSAADLS 359
                      |:|..:|:|.:|:   ...:.|||:::.|....:.... |||:||:..|.||...
Mouse   522 ----------LSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKD 576

  Fly   360 GRIRVNDRIIEVDGQSLQGYSNHQAVELLKKSG----------QVVNLR-----LERY-----LR 404
            ||:|:||::|.|:|::|.|.|||:|:|.|::|.          |:|.||     ||..     |.
Mouse   577 GRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRPERPLEELSECGALS 641

  Fly   405 GPKFEQLQQAIAANDKLPSSAPGTPSRAPMPTPVATTSSATTTPSRSITRE--LEEEALPAPEAF 467
            .|.||..|:|::.:.:..||         :..|..|.|.........:..:  .|.|..|:|   
Mouse   642 RPGFENCQEALSTSRRNDSS---------ILYPFGTYSPQDKRKDLLLPSDGWAENEVPPSP--- 694

  Fly   468 MTTPP-------------------------------SVTTMTTTTLSSFGAGKQLVAVRDSLDGS 501
               ||                               :||.:....|.:..|.|       |:|  
Mouse   695 ---PPHPALEWGLEDFSHSSGVDSTGYFPDQHVNFRTVTPVRQPELINLKASK-------SMD-- 747

  Fly   502 TKIIPTE--VVPLADKTEAKNSGVITRHKYYTDPELSDDAETEIIRKWQKIVGSDVEVIVAQIKK 564
              ::|.|  |..|||:.              :|....|...|..::|...:  ..::..||:::|
Mouse   748 --LVPDEGKVQSLADRR--------------SDSPGKDFGPTLGLKKSSSL--ESLQTAVAEVRK 794

  Fly   565 ----------FAVGGLGI----------SLEG--TVDVEG--GREVRPHHYIRSI--LPDGPVGV 603
                      ..|.|.|.          |.:|  ..|.:|  .:..|..|...:.  .|.|...:
Mouse   795 NDLPFHRPRPHMVRGRGCNESFRAAIDKSYDGPEEADADGLSDKSSRSGHTALNCESAPQGNPEL 859

  Fly   604 NGVLRSGDELLEV-NGERLLGMNHLEVVAILKELPLDVRMVCGRNRNSSLLPFSDDTLKKLSNNF 667
            :.|......:.:. ..|:..|...|:|    ||                         |||....
Mouse   860 DNVENKAKNIKKTKEKEKKKGKGKLKV----KE-------------------------KKLKEEH 895

  Fly   668 ENLLPATDRLVKAKSDGSLATAGSVADGDSVAAAAASFSKLKSRSLEPLTGLAMWSSQPQIIELV 732
            |:    .:|.:|.|..|::...|...| |.|..|.   .|...:|..|         :.:.:|.:
Mouse   896 ED----AERKMKRKGFGAMLRFGKKKD-DKVGKAE---QKGAQKSGHP---------EEEELERM 943

  Fly   733 KGDR-GLGF-----------SILDY------------QDPLDPNDTLI-----------VIRSLV 762
            |.:| .:|.           .::||            .|.:|||...:           |.||..
Mouse   944 KEERERIGAKHQELREKQARGLVDYATAVTGPVHDMDDDEMDPNYARVNHFREPCASANVFRSPS 1008

  Fly   763 PGGVAQL----DGRLIPGDRL 779
            |.....|    |||.:..|.|
Mouse  1009 PLRAGPLAYPRDGRPLSPDHL 1029

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PatjNP_477342.1 L27 12..70 CDD:295425 11/58 (19%)
PDZ_signaling 154..226 CDD:238492 31/79 (39%)
PDZ_signaling 318..400 CDD:238492 34/100 (34%)
PDZ_signaling 557..643 CDD:238492 21/112 (19%)
PDZ_signaling 726..807 CDD:238492 20/93 (22%)
Pard3bXP_006496361.1 DUF3534 2..74 CDD:338230
PDZ_signaling 236..323 CDD:238492 11/60 (18%)
PDZ 415..504 CDD:214570 35/102 (34%)
PDZ_signaling 536..624 CDD:238492 31/87 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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