DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Patj and lnx1

DIOPT Version :9

Sequence 1:NP_477342.1 Gene:Patj / 44100 FlyBaseID:FBgn0067864 Length:871 Species:Drosophila melanogaster
Sequence 2:XP_005160562.1 Gene:lnx1 / 561226 ZFINID:ZDB-GENE-030131-9439 Length:769 Species:Danio rerio


Alignment Length:817 Identity:179/817 - (21%)
Similarity:274/817 - (33%) Gaps:300/817 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 DSLSELN--------------AQLAQHPSMLPNDFDIDVAGNLVLSLNGGEVMY----------- 96
            ||.|||.              |.|:..|.::...::..|..|   |.:|.....           
Zfish   167 DSTSELTLAALPGEGCPSSAIALLSDEPGLVNPAYEPSVEDN---SQSGSTTSLAARSGSRKSEY 228

  Fly    97 -DFDEQRSSSHSHS--------APGSPDKSG-GVGEEPRPQSQNSKGAGV---ADLYATDYAQIQ 148
             :||  |:|..|.|        :.....||| .|..:...:..|.:.|.:   .:|:|..    |
Zfish   229 RNFD--RTSVRSRSFRRLNRAFSVLRRTKSGTAVANDTTEERDNLRNANIPAEGELFALP----Q 287

  Fly   149 AIELVNDG-------------TGLGFGIIGARNS---GVIVKTILPGGVADKDGRLRSGDHILQI 197
            ...|:.||             ..|...|:|...:   .::::.|...||..:||||..||.||::
Zfish   288 LHHLIPDGEVTSIKITRADPCEPLAISIVGGNETPLVRILIQDIYREGVIARDGRLLPGDMILKV 352

  Fly   198 GDVNLHEMVSEQVAAVLRQSGTHVRLVVARPVEQSVPTPQYALEPGTAVVPTRVLVDPAELERYL 262
            ..:::..:......|.|:|..|.:||.|.|.......:..::        ||             
Zfish   353 NGIDISNVPHCYAVAALKQPCTLLRLTVLREQRHRYRSHHHS--------PT------------- 396

  Fly   263 ISTGYPEIFGESSTASTPQTTTEDDRFVYRGETSMLIDPNIDLEELLALPETEKLQVELKKDA-- 325
                      |:..|.|  .|..||                            .|.|.|.|.|  
Zfish   397 ----------EAFPAHT--ATIRDD----------------------------SLHVVLVKRAPD 421

  Fly   326 NGLGITIAGYVCEKEELSGIFVKSVSPGSAADLSGRIRVNDRIIEVDGQSLQ-GYSNHQAVELLK 389
            ..|||.:.    .:.:..|:|:..:..|..|...||:||:||::.::|..|: |...|.|: |::
Zfish   422 EQLGIKLV----RRPDEHGVFIFHLLEGGLAARDGRLRVDDRVLAINGHDLRYGAPEHAAL-LIQ 481

  Fly   390 KSGQVVNLRLERYLRGPKFEQLQQAIAANDKLPSSAPGTPSRAPMPTPVATTSSATTTPSRSITR 454
            .|...|:..:.|....|..:.||:|       |.:..|.|..:|:                    
Zfish   482 ASEDRVHFIVSRQTHIPAPDILQEA-------PWNMEGPPPYSPV-------------------- 519

  Fly   455 ELEEEALPAPEAFMTTPPSVTTMTTTTLSSFGAGKQLVAVRDSLDGSTKIIPTEVVPLADKTEAK 519
            ::|...|.:.:     .|:....|.|.|..         ..||| |.|..               
Zfish   520 DIEHTLLDSCQ-----KPACYEKTVTLLKE---------PHDSL-GMTVA--------------- 554

  Fly   520 NSGVITRHKYYTDPELSDDAETEIIRKWQKIVGSDVEVIVAQIKKFAVGGLGISLEGTVDVEGGR 584
             .|:.:|                         |.|:.|                           
Zfish   555 -GGMSSR-------------------------GWDLPV--------------------------- 566

  Fly   585 EVRPHHYIRSILPDGPVGVNGVLRSGDELLEVNGERLLGMNHLEVVAILKEL--PLDVRMVCGRN 647
                  |:.::.|:|.||..|.:|.||.||.|||..|.|:...|.||.||..  |:.::::..|.
Zfish   567 ------YVTNVDPNGVVGQEGSIRKGDILLNVNGVDLTGVTRSEAVANLKNTSSPVVLQVLEMRP 625

  Fly   648 RNSSLLPFSDDTLKKLSNNFENLLPATDRLVKAKSDGSLATAGSVADGDSVAAAAASFSKLKSRS 712
            .|.|.|    |.:..|.:      |.      |.|..|..........|..|             
Zfish   626 PNESSL----DCMPPLHS------PC------ALSPSSPGDVKLPPPNDDYA------------- 661

  Fly   713 LEPLTGLAMWSSQPQI---------IELVKGDRG-LGFSILDYQDPLDPNDTLIVIRSLVPGGVA 767
              ||     |.|..|:         |.|.:...| |||||:..|:.|:.|.:.. |||:|.|..|
Zfish   662 --PL-----WVSWLQLPRHLYCCKDIVLRRSTSGSLGFSIVGGQEELNCNQSFF-IRSIVEGTPA 718

  Fly   768 QLDGRLIPGDRLLFVN---SINLENASLDQAVQALKG 801
            ..|||:..||.||.||   :..:.:.:|.:.::.|:|
Zfish   719 YNDGRIRCGDILLEVNGKSTWGMTHTALVRLLKELRG 755

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PatjNP_477342.1 L27 12..70 CDD:295425 7/26 (27%)
PDZ_signaling 154..226 CDD:238492 22/87 (25%)
PDZ_signaling 318..400 CDD:238492 25/84 (30%)
PDZ_signaling 557..643 CDD:238492 23/87 (26%)
PDZ_signaling 726..807 CDD:238492 30/89 (34%)
lnx1XP_005160562.1 RING 57..93 CDD:214546
PDZ_signaling 297..381 CDD:238492 20/83 (24%)
PDZ_signaling 411..491 CDD:238492 26/84 (31%)
PDZ_signaling 536..621 CDD:238492 35/168 (21%)
DegQ <548..621 CDD:223343 31/147 (21%)
PDZ_signaling 678..762 CDD:238492 29/79 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19964
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

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