DRSC/TRiP Functional Genomics Resources

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Protein Alignment Patj and pard3b

DIOPT Version :9

Sequence 1:NP_477342.1 Gene:Patj / 44100 FlyBaseID:FBgn0067864 Length:871 Species:Drosophila melanogaster
Sequence 2:XP_002936439.2 Gene:pard3b / 496480 XenbaseID:XB-GENE-5816818 Length:1137 Species:Xenopus tropicalis


Alignment Length:855 Identity:184/855 - (21%)
Similarity:298/855 - (34%) Gaps:314/855 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 LQQIEAVKKGIDESDD-----------------PKLQMQTAESLSTILGILQDPVFRT------- 51
            :..:|.:.:...::.|                 |:.:....:|:.:.|.:|.|.:...       
 Frog   255 INNVELIDRSFAQAQDIFRQAMKQQNVLVETVLPEKRELYEKSVISSLFVLDDDIDEVPDIKPPP 319

  Fly    52 -IVHVQDSL---SELN-----AQLAQHPSMLPNDFDIDVAGNLVLSLNGGEVMYDFDEQRSSSHS 107
             .|||..|:   .::|     ....|.|.:.|         ||:.|           |.:.||.|
 Frog   320 PPVHVNRSIKMPEQVNGIDPTGTKIQQPPLSP---------NLISS-----------ESKFSSPS 364

  Fly   108 HSAPGSPDKSGGVGEEPRPQSQNSKGAGVADLYATDYAQIQAIELVNDGTGLGFGIIGARNSGV- 171
            .|..|..:|..|                          :...|:|.....||||.:: .|:|.| 
 Frog   365 LSPLGFGNKKNG--------------------------KKLRIDLTKGAEGLGFTVV-TRDSTVH 402

  Fly   172 -----IVKTILPGGVADKDGRLRSGDHILQIGDVNLHEMVSEQVAAVLRQS--GTHVRLVVARPV 229
                 .||.|||.|.|.|||||.|||.||::...::.....|::.|:||.:  |..|.|||||..
 Frog   403 GPGPIFVKNILPKGAAVKDGRLLSGDRILEVNGKDIAGKTQEELVAMLRSTKLGESVSLVVARQD 467

  Fly   230 EQSVPTPQYALEPGTAVVPTRVLVDPAELERYLISTGYPEIFGESSTASTPQTTTEDDRFVYRGE 294
            |..:                     |.||                                 :||
 Frog   468 ETFL---------------------PREL---------------------------------KGE 478

  Fly   295 TSMLIDPNIDLEELLALPE-TEKLQVEL---KKDANGLGITIAGYVCEKEELS-GIFVKSVSPGS 354
            |..|:.|          |: |.::..|:   ...:.||||::.|....:.... |||:||:..|.
 Frog   479 TENLVFP----------PDNTAQMTFEIPLNDSGSAGLGISLKGNKSRETGADLGIFIKSIIHGG 533

  Fly   355 AADLSGRIRVNDRIIEVDGQSLQGYSNHQAVELLKKS----GQV---VNLRLERYL------RGP 406
            ||...||:||||:::.|:|:||.|.||..|:|.|::|    |.:   :.|.:.|.|      |..
 Frog   534 AAFKDGRLRVNDQLVAVNGESLLGKSNRDAMETLRRSMSMEGNIRGMIQLVILRRLDWQTEERSE 598

  Fly   407 KF-----------------EQLQQAIAANDK-----LPSSAPGTPS-----RAPMPTPVATT--- 441
            .|                 |:|:.:...||:     :|...|..|.     .:|....||.:   
 Frog   599 TFQKNTIENLAVSEQNGVQEKLKDSSRFNDRNSENYIPPPIPPHPKEHIIVESPKLRNVAESQPN 663

  Fly   442 SSATTTPSRSITRELEEEALPA--------------PEAFMTTPPSVTTMTTTTL---------- 482
            .|.....|||:....:|..:.:              |...:....|:.::.|...          
 Frog   664 DSLNIKASRSMDIVADESNIGSLREHQSGSPGKDFGPRLGLKKSSSLESLQTAFAEVKKNELPFY 728

  Fly   483 -------------SSFGA----------GKQLVAVRDSLDGSTKIIP-TEVVPLADKTEAKNSGV 523
                         .||.|          |::..|:.|....|.:..| :|:.||.:: |.::   
 Frog   729 RPRPHMVRGRGCNESFRAAIDKSYDGPEGEEEDALSDLSSHSGRESPNSELTPLGNQ-EMED--- 789

  Fly   524 ITRHKYYTDPELSDDAETEIIRKWQKIVG------SDVEVIVAQIKKFAVGGLGISL-------- 574
                   ||....:..:.::.::..|..|      .|.|....:.||...|.||..:        
 Frog   790 -------TDKSKKEKKKKDVKKEKAKAKGKEKKKKDDAEEHEKKAKKKGFGVLGRLIKKKEEKGN 847

  Fly   575 --EGTV-----DVEGGREVR-----PHHYIRSILPDGPVGVNGVLRSGDELLEVNGERLLGMNHL 627
              :||:     :||..:|.|     .|..:|.......:|.|......|:.::.|..:   :||.
 Frog   848 QKQGTLKEEENEVEKMKEERERINIKHQELREQQAKNLLGYNWSHDMEDDDMDPNYAK---VNHF 909

  Fly   628 EVVAILKELPLDVRMVCGRNRNSSLLPFSDDT---------LKKLSNNFENLLPATDRLVKA--K 681
            :      |.||        |.|:. .|:|..|         .:.||:..|:|....::..:|  |
 Frog   910 Q------EAPL--------NHNAH-RPYSPPTTLPPSYPRETQVLSSEREDLYAKINKKQQAPDK 959

  Fly   682 SDGSLATAGS 691
            ||...:|:|:
 Frog   960 SDSGRSTSGT 969

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PatjNP_477342.1 L27 12..70 CDD:295425 13/90 (14%)
PDZ_signaling 154..226 CDD:238492 32/79 (41%)
PDZ_signaling 318..400 CDD:238492 33/92 (36%)
PDZ_signaling 557..643 CDD:238492 22/105 (21%)
PDZ_signaling 726..807 CDD:238492
pard3bXP_002936439.2 DUF3534 2..83 CDD:338230
PDZ_signaling 199..284 CDD:238492 2/28 (7%)
PDZ 381..467 CDD:214570 37/86 (43%)
PDZ_signaling 498..586 CDD:238492 32/87 (37%)
DUF3824 <1014..1128 CDD:372351
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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