DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Patj and loco

DIOPT Version :9

Sequence 1:NP_477342.1 Gene:Patj / 44100 FlyBaseID:FBgn0067864 Length:871 Species:Drosophila melanogaster
Sequence 2:NP_732773.1 Gene:loco / 42672 FlyBaseID:FBgn0020278 Length:1541 Species:Drosophila melanogaster


Alignment Length:1030 Identity:189/1030 - (18%)
Similarity:331/1030 - (32%) Gaps:303/1030 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 PKLQMQTAESLSTILGILQDPVFRTIVHVQDSLSELNAQLA----------QHPSMLPNDFDIDV 81
            |...:.:..|...:|.:..|...||:..|. |:.:::...|          .||:.:|.    .:
  Fly   565 PATNLTSTRSCDDVLNLFVDDSPRTLAAVA-SMDDISLHSAAPSLDEGHTFAHPACVPR----KM 624

  Fly    82 AGNLVLSLNGGEVMYDFDEQRSSSHSHSAP--GSPDKSGGVGEEPRPQSQNSKGAGVADLYATDY 144
            ..:|.|            |..::.|..||.  |.|.....:|.|.....|:|......|.....:
  Fly   625 RRSLAL------------ETPTTPHKLSAQVFGQPGSRHSLGFEAIDSVQSSVSGACMDQTMDTW 677

  Fly   145 AQIQ--------------------AIELVNDGTGLGFGIIGARNSGV-------IVKTILPGGVA 182
            |.:|                    .:|..|....||...:.|..|..       ..:|.....||
  Fly   678 ASLQNLHKSHKDRTSMSASSSSHCLLEATNSEPDLGNRALPANASPFRRAWGQSSFRTPRSDKVA 742

  Fly   183 DKDGRLRSGDHILQIGDVNLHE--------MVSEQVAAVLRQSGTHVRLVVARPVEQSVPTPQYA 239
            .:..:|.....:.:...:|..:        |:...:.:...|   |...::..|...:.|.|..|
  Fly   743 KEQQQLGQSSPVRRTASMNASDNDMYIKTLMLDSDLKSSRSQ---HQLSLLQVPKVLTTPAPPSA 804

  Fly   240 LEPGTAV--------VPT-------RVLVDPAELERYLISTGYPEIFGESSTASTPQTTTEDDRF 289
            :....|.        .|:       |:|.|.|.::.      :.|...:..:|......|..:| 
  Fly   805 ITASVAAEGAAQDHGCPSSWAGSFERMLQDAAGMQT------FSEFLKKEFSAENIYFWTACER- 862

  Fly   290 VYRGETSMLIDPNIDLEELLALPETEKLQVELKKDANGLGITIAGYVCEKEELSGIFVKSVSPGS 354
             ||                  |.|:|                 |..|.:..|   ||.|.::..|
  Fly   863 -YR------------------LLESE-----------------ADRVAQARE---IFAKHLANNS 888

  Fly   355 A----ADLSGRIRVNDRIIEVDGQSLQGYSNHQAVELLKKSGQVVNLRLERYLRGPKFEQLQQAI 415
            :    .|...|....:::.:. ...:...:..|...|:|...      .:|::|...::...:|.
  Fly   889 SDPVNVDSQARSLTEEKLADA-APDIFAPAQKQIFSLMKFDS------YQRFIRSDLYKSCVEAE 946

  Fly   416 AANDKLP--------------------------SSAPGTPSRAPMPTPVATTSSATTTPSRSITR 454
            ..|..||                          |:|.....::.:|....|.|.  :.....|..
  Fly   947 QKNQPLPYSGLDLDELLKTNFHLGAFSKLKKSASNAEDRRRKSLLPWHRKTRSK--SRDRTEIMA 1009

  Fly   455 ELEEEALPAPEAFMTTPPSVTTM--------------TTTTLSSFGAGKQL---VAVRDSL---- 498
            :::...:|||......|.:..::              :.::||||.||...   .|..:|:    
  Fly  1010 DMQHALMPAPPVPQNAPLTSASLKLVCGQNSLSDLHSSRSSLSSFDAGTATGGQGASTESVYSLC 1074

  Fly   499 -----DGSTKIIPTE----VVPLADKTEAKNSGVITRHKYYTDPELSDDAETEIIRKWQKIVGSD 554
                 ||:|.|:.|.    |..|.::...|.:.|   :.||...........::.:..|.:.|. 
  Fly  1075 RVILTDGATTIVQTRPGETVGELVERLLEKRNLV---YPYYDIVFQGSTKSIDVQQPSQILAGK- 1135

  Fly   555 VEVIVAQIKKFAVGGLGISLEGTVDVEGGREVRPHHYIRSIL----------------PDGPVGV 603
             ||::.:...|.   |.:.....:.|:...:.:.|..||.||                ...|:.:
  Fly  1136 -EVVIERRVAFK---LDLPDPKVISVKSKPKKQLHEVIRPILSKYNYKMEQVQVIMRDTQVPIDL 1196

  Fly   604 NGVLRSGDELLEVNGERLLGMNHLEVVAILKELPLDVRMVCGRNRNSSLLPFSDDTLKKLSNN-F 667
            |..:...|      |:|      |.:|.:..:..:.........::..:.|.....|.:|:|. |
  Fly  1197 NQPVTMAD------GQR------LRIVMVNSDFQVGGGSSMPPKQSKPMKPLPQGHLDELTNKVF 1249

  Fly   668 ENLL------PATDR-----LVKAKSDGSLATAGSV--------ADGDSVAAAAASFSKLKSRSL 713
            ..||      .|:::     |...||:.:.:...|:        .||.::  .|:...|||.:|.
  Fly  1250 NELLASKADAAASEKSRPVDLCSMKSNEAPSETSSLFERMRRQQRDGGNI--PASKLPKLKKKST 1312

  Fly   714 -------EPLTGLAMWSSQPQIIELVKGDRGLGFS--ILDYQDPLDPNDTLIVIRSLVPGGVAQL 769
                   |..|..|:...:..||..:|....|..:  :.::||.|        :..|....:|:|
  Fly  1313 SSSQQSEEAATTQAVADPKKPIIAKLKAGVKLQVTERVAEHQDEL--------LEGLKRAQLARL 1369

  Fly   770 D---GRLIPGDRLLFVNSINLENASLDQAVQALK--GASKGVVRIGVAKP--LPMTDNSLKACSN 827
            :   |..|..|...|:.  |.||  |..||..|:  .||...|....|.|  :|.....|....:
  Fly  1370 EDQRGTEINFDLPDFLK--NKEN--LSAAVSKLRKVRASLSPVSKVPATPTEIPQPAPRLSITRS 1430

  Fly   828 ASTTSEETLDAQPSPPALPTV---------APPAMPPSASMGAEPDLIP----DW 869
            ....|...:|.:|... ||..         |||.:||      :|.::|    :|
  Fly  1431 QQPVSPMKVDQEPETD-LPAATQDQTEFAKAPPPLPP------KPKVLPIKPSNW 1478

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PatjNP_477342.1 L27 12..70 CDD:295425 9/52 (17%)
PDZ_signaling 154..226 CDD:238492 13/86 (15%)
PDZ_signaling 318..400 CDD:238492 12/85 (14%)
PDZ_signaling 557..643 CDD:238492 16/101 (16%)
PDZ_signaling 726..807 CDD:238492 23/87 (26%)
locoNP_732773.1 PDZ_signaling 69..145 CDD:238492
PTB_RGS12 251..391 CDD:269984
RGS_R12-like 828..941 CDD:188661 27/165 (16%)
RGS12_RBD 1073..1145 CDD:176412 15/76 (20%)
RBD 1144..1213 CDD:128731 15/83 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.