DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Patj and bbg

DIOPT Version :9

Sequence 1:NP_477342.1 Gene:Patj / 44100 FlyBaseID:FBgn0067864 Length:871 Species:Drosophila melanogaster
Sequence 2:NP_001246755.1 Gene:bbg / 39583 FlyBaseID:FBgn0087007 Length:2637 Species:Drosophila melanogaster


Alignment Length:993 Identity:205/993 - (20%)
Similarity:319/993 - (32%) Gaps:349/993 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 SSALQQIEAVKKGIDESDDPKLQMQTAESLSTILGILQDPVFRTIVHVQDSLSELNAQLAQHPS- 71
            ||:...::.....::..:|.:.|.|.|:.|..:             ||.||:..||. ....|| 
  Fly  1800 SSSAPSLKTRAMSVENLNDVQRQYQLAKQLPQL-------------HVADSMYSLNT-ATPTPSY 1850

  Fly    72 -MLP-----NDFDIDVAGNLVLSLNGGE------VMYDFDEQRSSSHSHSAPGSPDKSGGVGEEP 124
             .||     ..:...|...:..|..||:      .:.:..|||..|.|        |..|:....
  Fly  1851 ASLPRRSHGGSYSSGVERRISFSGEGGDAANRKAAITNILEQRRRSLS--------KLRGLVIPE 1907

  Fly   125 RPQ-------------------SQNSKGAGVADLYATDYAQIQAIELVNDGTGLGFGIIGARNSG 170
            |||                   .::|..:|:.:.:.:         .||....||.|  ||.|: 
  Fly  1908 RPQLLEPILDLPEIKSQVKAASGEDSTDSGLGESHRS---------TVNRNCQLGAG--GAANN- 1960

  Fly   171 VIVKTILPGGVADKDGRLRSGDHILQIGDVNLHEMVSEQVAAVLRQSGTHVRLVVARPVEQSVPT 235
              .::||                                        .|:.|    ||:||.:..
  Fly  1961 --YRSIL----------------------------------------NTNQR----RPLEQQLSQ 1979

  Fly   236 PQYALEPGTAVVPTRVLVDPAELERYLISTGYPEIFGESSTAS----TPQTTTEDDRF------- 289
            |        ...|.|..:.|.:....:|....|.:..||.|.|    |.:..|..::|       
  Fly  1980 P--------PAKPPRTSLTPLQPRSMMIPPPPPPLDQESDTDSVFSHTARVATPPEKFALTRTLS 2036

  Fly   290 ------VYRGETSMLID----------------PNIDLE-----------ELLALPETEKLQVEL 321
                  :....||.|..                |.:||.           |.:||...:.:....
  Fly  2037 SETNTSIASSNTSTLTSGSSAGSQASCSSLGSTPAVDLTRRVLKSQVINGEAVALSSRKSILASA 2101

  Fly   322 K-KDANGLGITIAGYVCEKE-------ELSGIFVKSVSPGSAADLS------GRIRVNDRIIEVD 372
            | :.|...|        ::|       |...:..:.:.|.|:..|.      |:..|.|::|.|.
  Fly  2102 KCRSAKSRG--------QEEDNDSTDGEACSLANRRMKPISSYKLQQQQIQLGKQLVVDKLINVA 2158

  Fly   373 G-------------------------------QSLQGYSNHQAVELLKKSGQVVNLRLERYLRGP 406
            .                               .|.:|..|.||   ..|..||..:.|...|...
  Fly  2159 AYVELTSDTDDSSRRSDTPAKISAMFIDEERKASFKGDPNQQA---KVKVEQVKPMVLPMLLPSA 2220

  Fly   407 KFEQLQQAIAA--NDKLPSSAPG---TPSRAPMPTPVATTSSATTTPSRSITRELEEEALPAPEA 466
            |.|.|:|...|  .:|...||..   |.:.:|:      ....|..|.......|:..|..:...
  Fly  2221 KREPLKQQTTAELREKFERSAAAQAQTQNHSPV------IHKVTQKPHHERFSSLDSLASSSSGV 2279

  Fly   467 FMTTPPSVTTMTTTT----LSSFGAGKQLVAVRDSLDGSTKIIPTEVVPLAD---KTEAKNSGVI 524
            ..||....||..|.|    .||.|:.:.|:..:|         ..::|..||   ||......|:
  Fly  2280 SSTTQNVSTTQETATEFGSFSSLGSNQSLITAQD---------VQQIVEEADPPLKTPEAFIIVL 2335

  Fly   525 TRHKYYTDPELSDDAETEIIRKWQKIVGSDVEVIVAQIKKFAVGGLGISLEGTVDVEGGREVRPH 589
            .|.    :||.|                                 :||:|.|..|.| .:|:..|
  Fly  2336 QRE----NPESS---------------------------------IGITLAGGSDYE-AKEITIH 2362

  Fly   590 HYIRSILPDGPVGVNGVLRSGDELLEVNGERLLGMNHLEVVAILKELPLDVRMVCGRN------- 647
                .||.:.|...:|.|:.||.:|.|||..:.|:.|.|.:::||....:|.:|..|:       
  Fly  2363 ----KILSNTPAAKDGRLKKGDRILAVNGMSMRGLTHRESISVLKTPRPEVVLVVTRSESLVVKA 2423

  Fly   648 ---RNSSLLPFSDDTLKKLSNNFE---NLLPAT-------DRLVKAKSDGSLAT---AGSVA--- 693
               :.|||...|....|....::|   |...|:       |.:.....:..:||   .|||:   
  Fly  2424 LTKKRSSLGSLSSLNEKPTELDYERKRNYHKASRSLDLDLDLVSNEAGESPVATTPSTGSVSPPQ 2488

  Fly   694 -----DGDSVA---------------AAAASFSKLKSRSLEPLTGL-----------AMWSSQPQ 727
                 |.|:.|               ||..|.|:|..|:.|....:           |......:
  Fly  2489 PASLHDEDAEATIAGIRARRQLSRGDAAKLSTSELLERAAEARNAIAAEIRAQAEDAAASGGGAR 2553

  Fly   728 IIELVKGDRGLGFSIL-DYQDPLDPNDTLIVIRSLVPGGVAQLDGRLIPGDRLLFVNSINLENAS 791
            .:|:||...||||||. .:..||  .:..::::.:..||.||...::..||.:|.:|..:....:
  Fly  2554 CVEIVKDSCGLGFSIEGGFDSPL--GNRPLIVKKVFMGGAAQKTNQVRNGDEILSINGASTSRMT 2616

  Fly   792 LDQAVQALKGASKGVVRI 809
            ...|...:|....|.|:|
  Fly  2617 RVDAWNYMKQLPLGPVKI 2634

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PatjNP_477342.1 L27 12..70 CDD:295425 11/57 (19%)
PDZ_signaling 154..226 CDD:238492 11/71 (15%)
PDZ_signaling 318..400 CDD:238492 21/126 (17%)
PDZ_signaling 557..643 CDD:238492 25/85 (29%)
PDZ_signaling 726..807 CDD:238492 22/81 (27%)
bbgNP_001246755.1 PDZ_signaling 90..177 CDD:238492
ATP-synt_B <1084..>1109 CDD:304375
PDZ_signaling 2331..2413 CDD:238492 30/123 (24%)
PDZ_signaling 2553..2634 CDD:238492 23/82 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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