DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Patj and Whrn

DIOPT Version :9

Sequence 1:NP_477342.1 Gene:Patj / 44100 FlyBaseID:FBgn0067864 Length:871 Species:Drosophila melanogaster
Sequence 2:XP_038965801.1 Gene:Whrn / 313255 RGDID:631330 Length:969 Species:Rattus norvegicus


Alignment Length:973 Identity:216/973 - (22%)
Similarity:330/973 - (33%) Gaps:310/973 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 LSADISSALQQIEAVKKGIDESDDPKLQMQT------------AESLSTILGILQDPVFRTIVHV 55
            |||::....|.:.|:      ..:|:.:..|            .:.:.|:..:|..||.|.:   
  Rat    36 LSANVRQLHQALTAL------LSEPEREQFTHCLNAYHARRNVFDLVRTLRVLLDSPVKRRL--- 91

  Fly    56 QDSLSELNAQLAQHPSMLPNDFDIDVAGNLVLSLNGGEVMYDFDEQRSSSHSHSAPGSPDKSGGV 120
               |..|...:.:...:|   ||...|..|.|             ..::.:...|..:||     
  Rat    92 ---LPMLRLVIPRSDQLL---FDQYTAEGLYL-------------PATTPYRQPAWAAPD----- 132

  Fly   121 GEEPRPQSQNSKGAGVADLYATDYAQIQAIELVNDGTGLGFGIIGARNSGV--IVKTILPGGVAD 183
                        |||..::......:.:|.|      ||||.|.|....||  .|..:.||.:|:
  Rat   133 ------------GAGPGEVRLVSLRRAKAHE------GLGFSIRGGSEHGVGIYVSLVEPGSLAE 179

  Fly   184 KDGRLRSGDHILQIGDVNLHEMVSEQVAAVLRQSGTHVRLVVARPVEQSVPTPQYALEPGTAVVP 248
            |:| ||.||.||::.|.:|..:...:....|:.|   .:||::......:|       .|.....
  Rat   180 KEG-LRVGDQILRVNDKSLARVTHAEAVKALKGS---KKLVLSVYSAGRIP-------GGYVTNH 233

  Fly   249 TRVLVDPAELERYLISTGYPEIFGESST--ASTPQTTT----EDDRFVYRGETSMLIDPNIDLEE 307
            ....|||.               |.|::  :|.|..:|    ||||      .|.|        .
  Rat   234 IYTWVDPQ---------------GRSTSPPSSLPHGSTLRQHEDDR------RSAL--------H 269

  Fly   308 LLALPETEKLQVELKKDANGLGITIAGYVCEKEELSGIFVKSVSPGSAADLSGRIRVNDRIIEVD 372
            ||...:.:|:.:.| .|...||:||.|   ..|...||::..|.|||.|:.|| ::|.|:|:||:
  Rat   270 LLQSGDEKKVNLVL-GDGRSLGLTIRG---GAEYGLGIYITGVDPGSEAESSG-LKVGDQILEVN 329

  Fly   373 GQSLQGYSNHQAVELLKKSGQVVNLRLERYLRGPKFEQLQQAIAAND--KLPSSAPGTPSRAPMP 435
            |:|.....:.:||:|||.|..::                   :...|  :||.:.          
  Rat   330 GRSFLSILHDEAVKLLKSSRHLI-------------------LTVKDVGRLPHAR---------- 365

  Fly   436 TPVATTS-SATTTPSRSITR------ELEEEALPAPEAFMTTPPSVTTMTTTTLSSFGAGKQLVA 493
            |.|..|. .|::....|||.      :|.||....| .|...|..    :..||||.  |.|..|
  Rat   366 TTVDQTKWIASSRIGESITNSAGFPGDLTEEGTNKP-GFYKGPAG----SQVTLSSL--GNQTRA 423

  Fly   494 VRDS-----------------LD---GSTKIIPTEVVPLAD--KTEAKNS------GVITRHKYY 530
            :.|.                 ||   |.|..:...|:.|.:  .|.||.|      |:|:     
  Rat   424 LLDDQARHLLTEQERATMMYYLDQYRGGTISVEALVMALFELLNTHAKFSLLSEVRGIIS----- 483

  Fly   531 TDPELSDDAETEIIRKWQKI------------VGSDVEVIVAQIKKFAVGGLGIS---------- 573
              |:..|..:..::|:  :|            ||....::.......:.|..|.|          
  Rat   484 --PQDLDRFDHLVLRR--EIESMKARQPPGPGVGDTYSMVSYSDTGSSTGSHGTSTTVSSARERL 544

  Fly   574 ------LEGTVDVEGGREVRPHHYIRSILPDGPVGVNGVLRSGDEL-----------LEVNGERL 621
                  :|.|:|:||..|.....  .:.|||  |.|:.|....::|           |....:||
  Rat   545 LWLIDLMENTLDLEGTGETTQGS--TNALPD--VSVDDVRSPSEDLPGIKPPPPPPPLAQGHDRL 605

  Fly   622 LGMNHLEVVAILKE--LPLDVRMVCG------RNRNSSLLPFSDDTLKKLSNNFENLLPATDRLV 678
            ||.....|    :|  .||......|      |||:....|              .:.|.     
  Rat   606 LGQTRKPV----REDSAPLSSAAHSGIVFSAPRNRSPPPPP--------------GIAPT----- 647

  Fly   679 KAKSDGSLATAGSVADGDSVAAAA-ASFSKLKSRSLEPL-TGLAMWSSQP-------QIIELVKG 734
                    .|.|..:..||.::.. ||.|.....|.:|| |.||:.:..|       |....:|.
  Rat   648 --------PTPGPSSARDSPSSPIYASISHANPSSRKPLDTHLALVNQHPIGPFPRVQSPPHLKS 704

  Fly   735 ------DRGLGF---SILDYQDPLDPNDTLIVIRSLVPGGVAQL-DGRLIPGDRLLFVNSINLEN 789
                  ..|.|.   |..::.|.:..|...:::....|.....: :.|.:|..|.....|     
  Rat   705 PPAEAPGAGAGLPPPSPSEHADAVGANQHFVLVEVHRPDSEPDVNEVRALPQTRTASTLS----- 764

  Fly   790 ASLDQAVQAL---KGASKGVVRIGVAKPLPMTDNSLKACSNASTTSEETLDAQPSPPAL--PT 847
             .|..:.|.|   .|...|......:.....|.|:..........:|.|.:....||.|  ||
  Rat   765 -QLSDSGQTLSEDSGVDAGETEASTSGRGRQTANTKNKNGKELPQTERTTEGANKPPGLLEPT 826

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PatjNP_477342.1 L27 12..70 CDD:295425 11/69 (16%)
PDZ_signaling 154..226 CDD:238492 26/73 (36%)
PDZ_signaling 318..400 CDD:238492 30/81 (37%)
PDZ_signaling 557..643 CDD:238492 25/114 (22%)
PDZ_signaling 726..807 CDD:238492 18/100 (18%)
WhrnXP_038965801.1 HN_L-whirlin_R1_like 38..113 CDD:259822 15/89 (17%)
PDZ_signaling 139..216 CDD:238492 26/86 (30%)
PDZ_signaling 276..356 CDD:238492 31/103 (30%)
HN_L-whirlin_R2_like 418..498 CDD:259823 19/88 (22%)
PDZ_signaling <908..949 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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