DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Patj and PsGEF

DIOPT Version :9

Sequence 1:NP_477342.1 Gene:Patj / 44100 FlyBaseID:FBgn0067864 Length:871 Species:Drosophila melanogaster
Sequence 2:NP_996333.4 Gene:PsGEF / 31224 FlyBaseID:FBgn0264598 Length:2777 Species:Drosophila melanogaster


Alignment Length:1115 Identity:205/1115 - (18%)
Similarity:325/1115 - (29%) Gaps:376/1115 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 SSALQQIEAVKKGIDESDDPKLQMQTAESLSTILGILQDPVFR------------TIVHVQDSLS 60
            ||||.....:|..:|:..........|.|...:....:..:|.            |...::....
  Fly  1284 SSALHLANWMKGQLDKQQQQARLAAIARSQENVSAEDEQLIFNSDSEQDERITYWTRQQLEKRTK 1348

  Fly    61 ELNAQLAQHP---SMLPNDFDIDVAGNLVLSLNGGEVMYDFDEQR------SSSHS--------- 107
            |||  ||:..   |..||.....::|...||::....:|...|..      |.|||         
  Fly  1349 ELN--LAKENGGLSARPNFGGKRLSGVEELSMSATSDIYSTSEAEGVTSVISQSHSTTSDSQITV 1411

  Fly   108 ---------------------HSAPGS--PDKSGGVGEEPR-----------PQSQNSKGA---- 134
                                 .|.||.  |...|||.....           ..||:|...    
  Fly  1412 RSSPIVLDKLAVCRHCHKNCQQSGPGGARPGGGGGVNNSSSTPVLLCNSLKVQHSQSSPNRCCKL 1476

  Fly   135 --GVADLYATDYAQIQAIELVN----DGTGLGFGIIGARNSGVIVKTILPGGVADKDGRLRSGDH 193
              |:|.          |.|:.|    :.||.|.|.:.:.:|..|... |...|.....|..:||.
  Fly  1477 SNGIAG----------ATEMANPKNSNRTGTGTGSVTSMSSSTITGE-LSSKVVASSSRRETGDT 1530

  Fly   194 ILQIGDVNLHEMVSEQVAAVLRQSGTHVRLVVARPVEQSVPTPQYALEPGTAVVPTRVL--VDP- 255
            ...:..:...|:...|..|.....|             ::|....:...|..|:....|  :|| 
  Fly  1531 ESDVAQLITDEISQSQSEATDDSVG-------------AMPNSSRSAGEGNPVITGSRLRHLDPP 1582

  Fly   256 ---AELERYLISTGYPEIFGESSTASTPQTTTEDDRFVYRGETSMLIDP-----NIDLEELLALP 312
               :.|.....|.|   :.|.|.....|...|       |....|..:|     |..::.::.:.
  Fly  1583 VSVSSLPNGHCSAG---VGGGSPKPLPPPRRT-------RVVAQMCQEPPRPKANQQVKAIVTIT 1637

  Fly   313 ETEKLQVELKKDANGLGITIAGYVCEKEELSGIFVKSVSPGSAADLSGRIRVNDRIIEVDGQSLQ 377
            ||.::........:|.|           ..:|......||...|....|....|   ....|...
  Fly  1638 ETARIMRSSPTKGSGSG-----------SATGTGSVGGSPAKYAACHCRCTPED---FTHAQLSP 1688

  Fly   378 GYSNHQAVELLKKSGQVVNL--------RLERYLRGPKFEQLQQA--IAANDKLPSSAPGTPSRA 432
            ....||..:||:...|....        :|...|.|  ..||..|  :...:::|.....||:.|
  Fly  1689 DKMEHQTCKLLESPKQTTTTLEQKQEDEQLSLMLIG--LAQLAPAATLCGQERIPKEENSTPTIA 1751

  Fly   433 PM-PTP-----------------------VATTSSATTT---PSRSITRELEEEALPAPEAFMTT 470
            .: |||                       .:|||:||||   |.::|...:.|::  ..|:.:..
  Fly  1752 VVPPTPDSVLTKTSTHVWDNSGCSSNGGGTSTTSTATTTTKQPRQAIIENIPEDS--CDESPLDE 1814

  Fly   471 PPSVTTMTTTTLSSFGAGKQLVAVRDSLDGSTKIIPTEVVPLADKTEAKNSGVITRHKYYTDPEL 535
            .|....| ::.|..||....|                |.:|..|:.:..:             ||
  Fly  1815 EPPYRPM-SSALRRFGTMSSL----------------EKLPSDDRMDEAD-------------EL 1849

  Fly   536 SDDAET--------EIIRKWQKIVGSDVEVIVAQIKKFAVGGLGISLEGTVDVEGGREVRPHHYI 592
            .||.::        ...:..:....:|.|..:.|....|....|:.:.|.....|....|...|:
  Fly  1850 DDDLDSFKPNGHDGNSPQNEEDDEDADSERALVQNDLGASSSSGVIVNGEGLASGAWTNRAGAYV 1914

  Fly   593 ----------RSILPDGPVG-----------VNGVLRSGDELLE------VNGERLLGMNHLEVV 630
                      |:.: |..:|           ..|.....||.::      .:||.:.|       
  Fly  1915 SDKMSFFEESRAFI-DKYLGRWNAGDAQQQHQQGTASETDEQMDECTSGATSGEEVWG------- 1971

  Fly   631 AILKELPL--------DVRMVCGRN------RNSSLLPFSDDT---------------------- 659
                 .|.        |::::...|      ::|:.|...|||                      
  Fly  1972 -----TPTSGGDNDDQDLQLINSENTHSSPTKSSTSLNDDDDTELMMDELLMAPPMTASTIRGLL 2031

  Fly   660 ----LKKLSNNFENLLPATDRLVKAKSD----GSLAT--------AGSVADGDSVAAAAASFSK- 707
                .::|...||....:.:...:..||    |...|        |||.:|.:||..|.....: 
  Fly  2032 PRFYRRRLEPLFEEETESDEEKTQQDSDDIKKGEATTNGHYLEDSAGSSSDSESVPPAPPLVPRP 2096

  Fly   708 -LKSRSLEPLT-----GLAMWSSQ----------PQIIELVKGDRGLGFSILDYQDPLDPNDTLI 756
             :..|..:|..     .|||...:          |.:.....|.|.|..:.|.....:||....:
  Fly  2097 VVPDREEDPSAEGQQENLAMEDQEDLHSSVERLLPNLATSAMGPRPLLTTRLLPTTAIDPQPPAV 2161

  Fly   757 VIRSLVPGGVAQLDGR--LIPGDRLLFVNSINLENASLDQAVQALKGASKGVVRIGVAKPLPMTD 819
            ::.|...   ..||.|  .:||                    :.|.|.|.|...:..::|.|::.
  Fly  2162 LVASSCE---YLLDQRPSSVPG--------------------RDLAGGSIGTTTMTSSRPTPLSP 2203

  Fly   820 NSLKAC---SNASTTSEETLDAQPSPPALPT-------------------------VAPPAMPPS 856
            ....|.   .||:.|::.|.....:|...|:                         ..||..||.
  Fly  2204 AKAAATPIGMNATMTTKTTTTTMMTPSRAPSSTISTISSASDTTSSGGRASGRPPRFVPPPPPPR 2268

  Fly   857 ASMGAEPDLI 866
            ..:..:.|||
  Fly  2269 RLLLTQTDLI 2278

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PatjNP_477342.1 L27 12..70 CDD:295425 11/69 (16%)
PDZ_signaling 154..226 CDD:238492 16/75 (21%)
PDZ_signaling 318..400 CDD:238492 14/89 (16%)
PDZ_signaling 557..643 CDD:238492 18/120 (15%)
PDZ_signaling 726..807 CDD:238492 17/82 (21%)
PsGEFNP_996333.4 DUF4799 <102..209 CDD:292674
C2 286..>381 CDD:278593
PDZ_signaling 644..716 CDD:238492
RhoGEF 831..1000 CDD:295373
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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