DRSC/TRiP Functional Genomics Resources

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Protein Alignment Patj and Cytip

DIOPT Version :9

Sequence 1:NP_477342.1 Gene:Patj / 44100 FlyBaseID:FBgn0067864 Length:871 Species:Drosophila melanogaster
Sequence 2:NP_001012086.1 Gene:Cytip / 311047 RGDID:1307990 Length:359 Species:Rattus norvegicus


Alignment Length:272 Identity:67/272 - (24%)
Similarity:105/272 - (38%) Gaps:84/272 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   258 LERYL---ISTGYPEIFGESSTASTP----QTTTEDDRFVYRGETSMLIDPNIDL---EELLALP 312
            |:|.|   .|.|..|...:|:.:|.|    ..|.||:|.:     .||.|....|   .:.|||.
  Rat     3 LQRLLQQQSSNGNLEYCADSAYSSYPTLTGPLTVEDNRRI-----QMLADTVATLPRGRKQLALA 62

  Fly   313 ETEKL---------QVELKKDANG-LGITIAGY------VCEKEELSGIF-VKSVSPGSAADLSG 360
            .:..|         .|.::|..|| .|..|..|      :|..|..:.|. |:..||...|.|  
  Rat    63 RSSSLGDFSCSQRKVVTVEKQDNGTFGFEIQTYRLQNQNICSSEVCTMICKVQEDSPAHCAGL-- 125

  Fly   361 RIRVNDRIIEVDGQSLQGYSNHQAVELLKKSGQVVNLRLERYLRG----------PKFEQLQQAI 415
              :|.|....|:|.|.:|:::.|.|:|::.||.::.:..   |.|          .|.:.|:|.:
  Rat   126 --QVGDIFANVNGVSTEGFTHKQVVDLIRSSGNLLTIET---LNGTMIHRRAELEAKLQTLKQTL 185

  Fly   416 ---------------------AAN---------DKLPSSAPGT---PSRAPMPTPVATTSSATTT 447
                                 |||         |:  ||..|.   ||.|.:..|..::.|:..:
  Rat   186 KKKWVELRSLHLQEQRLLHGDAANSPNLENMNLDE--SSLFGNLLGPSPAFLDRPRLSSESSCKS 248

  Fly   448 PSRSITRELEEE 459
            ...|:|.:.|::
  Rat   249 WLSSLTVDSEDD 260

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PatjNP_477342.1 L27 12..70 CDD:295425
PDZ_signaling 154..226 CDD:238492
PDZ_signaling 318..400 CDD:238492 26/89 (29%)
PDZ_signaling 557..643 CDD:238492
PDZ_signaling 726..807 CDD:238492
CytipNP_001012086.1 PDZ_signaling 76..161 CDD:238492 26/88 (30%)
Interaction with CYTH1. /evidence=ECO:0000250 166..188 3/21 (14%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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