DRSC/TRiP Functional Genomics Resources

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Protein Alignment Patj and Frmpd2

DIOPT Version :9

Sequence 1:NP_477342.1 Gene:Patj / 44100 FlyBaseID:FBgn0067864 Length:871 Species:Drosophila melanogaster
Sequence 2:XP_036014873.1 Gene:Frmpd2 / 268729 MGIID:2685472 Length:1383 Species:Mus musculus


Alignment Length:633 Identity:142/633 - (22%)
Similarity:227/633 - (35%) Gaps:193/633 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   128 SQNSKGAGVADLYATDYAQIQAIELVNDGT-GLGFGIIGARN-----SGVIVKTILPGGVADKDG 186
            |||||..|   |:......|..:.|..|.. |.||.|....:     ||:.:.:::|||.|::..
Mouse   759 SQNSKRKG---LFGEPNQDIVCVMLKRDPVHGFGFVINEGEDAEQTRSGIFISSLIPGGPAERAK 820

  Fly   187 RLRSGDHILQIGDVNLHEMVSEQVAAVLRQSGTHVRLVVARP--VEQSVPTPQYALEPGTAVVPT 249
            :::.|..||.:..::|..........:::.|...:.|::::|  |..::.:.:......:.:..|
Mouse   821 KIKPGGKILALNHISLEGFTFSMAVRMIQNSPDDMELIISQPKGVCGTIHSEEKNSTASSGMFCT 885

  Fly   250 RVLVDPA---------ELERYLISTGYPEIFGESSTASTP-QTTTEDDRFVYRGETSMLIDPNID 304
            .:|.:..         :.:|.:..|...:  |..|...:| ||.|.:..|               
Mouse   886 DILSNRCQGRQSPHIHDQDRSVRGTEMAQ--GAGSCPPSPLQTNTGEIYF--------------- 933

  Fly   305 LEELLALPETEKLQVELKKDANGLGITIAGYVCEKEELSGIFVKSVSPGSAADLSGRIRVNDRII 369
                          |||.|:...||.::.|.:.......||:|||:.||..|...|:|...||::
Mouse   934 --------------VELVKEDGTLGFSVTGGINTSVPHGGIYVKSIIPGGPAAKEGQILQGDRLL 984

  Fly   370 EVDGQSLQGYSNHQAVELLKKSGQVVNLRLERYLRGPKFEQLQQAIAANDKLPSSAPGTPSRAPM 434
            :|||.||.|.::.|||:.||..|||..|.|||  |||:                :||..||....
Mouse   985 QVDGVSLCGLTHKQAVQCLKGPGQVARLVLER--RGPR----------------AAPQCPSADDR 1031

  Fly   435 PTPV-ATTSSATTTPSRSITRELEEEALPAPEAFMTTPPSVTTMTTTTLSSFGAGKQLVAVRDSL 498
            ...| ...|..|..|.|           ||....:|..|                          
Mouse  1032 MGDVHMAVSLVTARPGR-----------PASSVSVTDGP-------------------------- 1059

  Fly   499 DGSTKIIPTEVVPLADKTEAKNSGVITRHKYYTDPELSDDAETEIIRKWQKIVGSDVEVIVAQIK 563
                            |.|.|                                          :|
Mouse  1060 ----------------KFEVK------------------------------------------LK 1066

  Fly   564 KFAVGGLGISLEGTVDVEGGREVRPHH---YIRSILPDGPVGVNGVLRSGDELLEVNGERLLGMN 625
            |.: .|||.|.   |.:|.|..:....   .|:.:.|..|...:|.:.:||.:|.|||:.:.|:.
Mouse  1067 KNS-RGLGFSF---VQMERGNCIHTKSDLVRIKRLFPGQPAEEHGAIAAGDIILAVNGKPIEGLA 1127

  Fly   626 HLEVVAILKELPLDVRMVCGRNRNSSLLPFSDDTLKKLSNNFEN-LLPATDRLVKAKSDGSLATA 689
            ..||:.:|:..|.:|.::..| ....:||       ::...::. .|....||..|...|| ..:
Mouse  1128 FQEVLHLLRGAPEEVTLLLCR-PPPGILP-------EMEPGWQTPELSGDQRLTMATCAGS-EQS 1183

  Fly   690 GSVADGDSVAAAAASFSKLKSRSLEPLTGLAMW-SSQPQIIELVKGDR 736
            .|:...|:..         .|.||:...||:.. .|..:.:..|||||
Mouse  1184 PSLDQEDNWR---------DSTSLDAGEGLSPGPESSYKDVRQVKGDR 1222

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PatjNP_477342.1 L27 12..70 CDD:295425
PDZ_signaling 154..226 CDD:238492 17/77 (22%)
PDZ_signaling 318..400 CDD:238492 34/81 (42%)
PDZ_signaling 557..643 CDD:238492 25/88 (28%)
PDZ_signaling 726..807 CDD:238492 5/11 (45%)
Frmpd2XP_036014873.1 PKc_like 6..188 CDD:419665
Ubiquitin_like_fold 329..422 CDD:421700
B41 334..538 CDD:214604
PH-like 534..635 CDD:418428
PDZ_signaling 775..859 CDD:238492 19/83 (23%)
PDZ 930..1018 CDD:214570 38/118 (32%)
PDZ 1061..1150 CDD:214570 28/135 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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