DRSC/TRiP Functional Genomics Resources

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Protein Alignment Patj and F28E10.4

DIOPT Version :9

Sequence 1:NP_477342.1 Gene:Patj / 44100 FlyBaseID:FBgn0067864 Length:871 Species:Drosophila melanogaster
Sequence 2:NP_500590.2 Gene:F28E10.4 / 185067 WormBaseID:WBGene00017902 Length:324 Species:Caenorhabditis elegans


Alignment Length:404 Identity:77/404 - (19%)
Similarity:130/404 - (32%) Gaps:153/404 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   319 VELKKDANGLGITIAGYVCEKEELSGIFVKSVSPGSAADLSGRIRVNDRIIEVDGQSLQGYSNHQ 383
            |:::.|     :|:: |:|.....:|:.                 :.|:||.|:  ::.|.::..
 Worm    38 VKIEDD-----MTVS-YICSNSFFNGLI-----------------MGDKIIRVN--NVSGSASRC 77

  Fly   384 AVELLKKSGQVVNLRLERYLRGPKFEQLQQAIAANDKLPSSAPGTPSRAPMPTPVATTSSATTTP 448
            ..|||:  |...|:.:.|       .:....:.......|........|.....|......||| 
 Worm    78 QSELLR--GTACNVEVSR-------RKGVTPVTCERLAKSGCNLRKGHACFVLDVERPPHMTTT- 132

  Fly   449 SRSITRELEEEALPAPEAFMTTPPSVTTMTTTTLSS--FGAGKQLVAVRDSLDGSTKIIPTEVVP 511
              |:..:|   .:....||      ||.:...|::|  ||.|..::    .:.|:.       :|
 Worm   133 --SVGLKL---GIIKRRAF------VTKVDPNTIASSFFGCGDSIM----DMSGAP-------IP 175

  Fly   512 LADKTEAKNSGVITRH--KYYTDPELSDDAETEI----IRKWQKIVGS----DVEVIVAQIKKFA 566
            :.|..:    ..|..|  :..|..::|...|..|    .:::||.:.|    |.||.:||     
 Worm   176 MTDNPD----NFIREHLSRLSTGAKVSFLVERPISVAMAKQYQKFIESITYDDSEVEMAQ----- 231

  Fly   567 VGGLGISLEGTVDV-EGGREVRPHHYIRSILPDGPVGVNGVLRSGDELLEVNGERLLGMNHLEVV 630
                        || |.|||....|::                                      
 Worm   232 ------------DVIEIGREASNMHFM-------------------------------------- 246

  Fly   631 AILKELPLDVRMVCGRNRNSSLLPFSDDTLKKLSNNFENLLPATDRLVKAKSDGSLATAGSVADG 695
             |||:|.           ..|:|. ||...:|.|||          .....::||: |..|.:..
 Worm   247 -ILKKLV-----------TPSILS-SDVRRRKKSNN----------KTSESTEGSI-TISSASTE 287

  Fly   696 DSVAAAAASFSKLK 709
            ..:.:....|..||
 Worm   288 MKITSDVTDFDDLK 301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PatjNP_477342.1 L27 12..70 CDD:295425
PDZ_signaling 154..226 CDD:238492
PDZ_signaling 318..400 CDD:238492 16/80 (20%)
PDZ_signaling 557..643 CDD:238492 14/86 (16%)
PDZ_signaling 726..807 CDD:238492
F28E10.4NP_500590.2 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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