DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Patj and mpz-4

DIOPT Version :9

Sequence 1:NP_477342.1 Gene:Patj / 44100 FlyBaseID:FBgn0067864 Length:871 Species:Drosophila melanogaster
Sequence 2:NP_500654.1 Gene:mpz-4 / 177255 WormBaseID:WBGene00019165 Length:402 Species:Caenorhabditis elegans


Alignment Length:419 Identity:90/419 - (21%)
Similarity:146/419 - (34%) Gaps:112/419 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   148 QAIELVNDGTGLGFGIIGARNSGVIVKTILPGG--------VADKDGRLRSGDHILQIGDVNLHE 204
            :.|:.|.:..|...|.|.||...|:   ||.|.        :.:....|...|.|.|:|.||.|.
 Worm    19 EGIDTVWERPGFKKGEIEARVKDVV---ILRGEPVPNSYKMLVEATFELPKKDKITQLGLVNRHG 80

  Fly   205 MVSEQVAAVLRQSGTHVRLVVARPVEQSVPTPQYALEPGTAVVP---TRVLVDPAELERYL-IST 265
            :|:              |:..|.|.:.       |:.||..::.   |.|..|..:|..:: .:|
 Worm    81 LVT--------------RVHYASPFKG-------AILPGDIILQVNGTTVSFDEKQLTEHVDETT 124

  Fly   266 GYPEIFGESSTASTPQTTTEDDRFVYRGETSMLIDPNIDLEELL-ALPETE--------KLQVEL 321
            |...:.....|.....|||.....| |...|:..|..:.:.::| :..||:        |.::..
 Worm   125 GGASLQSNVKTVKRKPTTTPKTEPV-RAPHSLYPDFKVVVGKILNSKSETKITVLVARLKNRMST 188

  Fly   322 KKDANGL------GITIAGYVCEKEELSGIFVKSVS---------PGSAADLSGRIRVNDRIIEV 371
            .|..||:      .|.:|.....|....|:.|:.|.         |.|.:..|  :.:.:.||.|
 Worm   189 SKIPNGILATQDHTIDLAILYQFKYLQLGLNVQQVDRKVVVNYTIPDSVSHCS--LNIGEAIIAV 251

  Fly   372 DGQSL-----------QGYSNHQAVELLKK-----------SGQVVNL-----RLERYLRGPKFE 409
            |.:.:           :|:..:..:.||.:           .||:.|:     |.:..|.|...:
 Worm   252 DDKPINTLADNRQRFREGFEANGWIRLLVEYPNTDPIKNMVRGQLANVMRTAERPQYLLCGDVRK 316

  Fly   410 QLQQAIAA--NDKL------PSSAPGTPSRAPMPTPVATTSSATTT---PSRSITRELEEEALPA 463
            ...:.|.|  |.|.      ....||...:        ..|.|..|   |:.......||..:||
 Worm   317 YFVEGIEALKNGKALAPILKEEEGPGEVGK--------KKSDAKVTKKDPAVGFNNTTEEFFIPA 373

  Fly   464 ---PEAFMTTPPSVTTMTTTTLSSFGAGK 489
               .:.|:..||..|.:|.:..|:....|
 Worm   374 EWNSKLFVWLPPLKTKVTESASSNMPVKK 402

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PatjNP_477342.1 L27 12..70 CDD:295425
PDZ_signaling 154..226 CDD:238492 19/79 (24%)
PDZ_signaling 318..400 CDD:238492 23/123 (19%)
PDZ_signaling 557..643 CDD:238492
PDZ_signaling 726..807 CDD:238492
mpz-4NP_500654.1 PDZ <81..130 CDD:381812 13/69 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.