DRSC/TRiP Functional Genomics Resources

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Protein Alignment Patj and gras-1

DIOPT Version :9

Sequence 1:NP_477342.1 Gene:Patj / 44100 FlyBaseID:FBgn0067864 Length:871 Species:Drosophila melanogaster
Sequence 2:NP_492164.1 Gene:gras-1 / 172549 WormBaseID:WBGene00009272 Length:245 Species:Caenorhabditis elegans


Alignment Length:172 Identity:36/172 - (20%)
Similarity:66/172 - (38%) Gaps:43/172 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   274 SSTASTPQTTTEDDRFVYRGETSMLIDPNIDLEELLALPETEKLQVELKKDA------------- 325
            |:::|:.:..|.||..   .|..:|.|..   ||   .|..:.|...:.:::             
 Worm    11 STSSSSSKYDTPDDNI---SEQRLLCDAK---EE---YPLNDYLFDGINQESAQRSLLLCRQTFE 66

  Fly   326 NGLGITIAGYVCEKEELSG----IFVKSVSPGSAADLSGRIRVNDRIIEVDGQSLQGYSNHQAVE 386
            ...|..:..||.::...:.    .:|..||..|.||..|..| .|.:|.|:.:|:...|:.:.||
 Worm    67 TSFGFALQSYVFKRTSSNSYERITYVDYVSADSPADRCGITR-GDMVIAVNEKSVVTASHAEIVE 130

  Fly   387 ------------LLKKSGQVVNLRLE----RYLRGPKFEQLQ 412
                        :.|...::|.|.:.    |::...|..:|:
 Worm   131 SIAQCLQVSLVLVFKDVARIVELSMRSIQLRFMLDAKIRELR 172

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PatjNP_477342.1 L27 12..70 CDD:295425
PDZ_signaling 154..226 CDD:238492
PDZ_signaling 318..400 CDD:238492 21/110 (19%)
PDZ_signaling 557..643 CDD:238492
PDZ_signaling 726..807 CDD:238492
gras-1NP_492164.1 PDZ 67..145 CDD:238080 18/78 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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