DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Patj and Grip2

DIOPT Version :9

Sequence 1:NP_477342.1 Gene:Patj / 44100 FlyBaseID:FBgn0067864 Length:871 Species:Drosophila melanogaster
Sequence 2:NP_612544.2 Gene:Grip2 / 171571 RGDID:621668 Length:1043 Species:Rattus norvegicus


Alignment Length:921 Identity:211/921 - (22%)
Similarity:324/921 - (35%) Gaps:278/921 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   118 GGVGEEPRPQSQNSKGAGVADLYATD-------------YAQIQAIELV-NDGTGLGFGIIGA-- 166
            |.|...|:.....|||.  .|...||             :..|..:||: .:|:.||..|.|.  
  Rat    11 GVVRRRPKDDGPYSKGG--KDTAGTDGALVCRRQSIPEEFRGITMVELIKREGSTLGLTISGGTD 73

  Fly   167 RNSGVIVKTILPGGVADKDGRLRSGDHILQIGDVNLHEMVSEQVAAVLRQSGTHVRLVVARPVEQ 231
            ::....|..:.|||:|.:...|..||:|..:..:.|..:..:::..:|:..|..|.|    .||.
  Rat    74 KDGKPRVSNLRPGGLAARSDLLNVGDYIRSVNGIRLTRLRHDEIITLLKNVGERVVL----EVEY 134

  Fly   232 SVPTPQYALEPGTAVVPTRVLVD-----------------------------------PAELE-- 259
            .:|.|  |.|....::...|.|.                                   ||:.|  
  Rat   135 ELPPP--APENNPRIISKTVDVSLYKEGNSFGFVLRGGAHEDLHKSRPLVLTYVRPGGPADREGS 197

  Fly   260 -----RYLISTGYPEIFGESSTA-STPQTTTEDDRFVYRGETSMLIDPNIDLEELLALPET---- 314
                 |.|...|.|......:|| :|.|..:.:..|              .:|..:|.|:|    
  Rat   198 LKVGDRLLSIDGIPLHGASHATAIATLQQCSHEALF--------------QVEYDVATPDTVANA 248

  Fly   315 -EKLQVELKK---DANGLGITIAGYVCEKEELSGIFVKSVSPGSAADLSGRIRVNDRIIEVDGQS 375
             ..|.||:.|   .|.|:.:|...:    .....|.:..:.|.|..|.||.:...|.|:.:||.|
  Rat   249 SGPLVVEIAKTPGSALGISLTTGSH----RNKPAITIDRIKPASVVDRSGALHAGDHILAIDGTS 309

  Fly   376 LQGYSNHQAVELLKKSGQVVNLRL------ERYLRGPKFEQLQQAIAANDKLPSSAPGTPS---- 430
            .:..|..:|.:||....:.|.|.:      .|.|:.|:..::|:    :::|....|..||    
  Rat   310 TEHCSLVEATKLLASVTEKVRLEILPAPQSRRPLKPPEAVRIQR----SEQLHHWDPCVPSCHSP 370

  Fly   431 -----RAPMPTPVA--TTSSATTTPSRSITRELEEEALPAPEAFMTTPPSVTTMTTTTLSSFGAG 488
                 |||...|..  .:.|.::||..|.|.   ..|.|...| .|.|....:..||      ||
  Rat   371 RPSHCRAPTWAPGGQDQSRSVSSTPFSSPTM---NPAFPCANA-STLPRGPMSPRTT------AG 425

  Fly   489 KQLVAVRD-----SLDGST-----KIIPTEVVPLADKTEAKNSGVITRHKYYTDPELSDDAETEI 543
            ::....::     ||..||     :|:.||.      ||....|         ||          
  Rat   426 RRRQRRKEHRSSLSLASSTVGPGGQIVHTET------TEVVLCG---------DP---------- 465

  Fly   544 IRKWQKIVGSDVEVIVAQIKKFAVGGLGISLEGTVDVEGGREVRPHHYIRSILPDGPVGVNGVLR 608
                                   :.|.|:.|:|.:.........|  .:|.|.||.|....|:|:
  Rat   466 -----------------------LSGFGLQLQGGIFATETLSSPP--LVRFIEPDSPAERCGLLQ 505

  Fly   609 SGDELLEVNG-----------ERLLGMNHLEVVAILKELPLDVRMVCGRNRNSSLLPFSDDTLKK 662
            .||.:|.:||           .:||....|....:| |:..||.        .|::|.|.....|
  Rat   506 VGDRVLAINGIATEDGTMEEANQLLRDAALARKVVL-EIEFDVA--------ESVIPSSGTFHVK 561

  Fly   663 LSNNFENLLPATDRLVKAK-------SD---GSLA-TAGSVADGDSVAA---------------- 700
            |.......|..|......|       ||   ||:| ..|::..||.:.|                
  Rat   562 LPKRRGVELGITISSASRKRGEPLIISDIKKGSVAHRTGTLEPGDKLLAIDNIRLDHCPMEYAVQ 626

  Fly   701 ---AAASFSKLKSRSLEPLTGLAMWSSQPQ--------IIELVKGDRGLGFSILDYQDPLDPNDT 754
               ......|||.|..|.       :|..|        .:||.:....||.:|...::|.||   
  Rat   627 ILRQCEDLVKLKIRKDED-------NSDEQESSGAVSYTVELKRYGGPLGITISGTEEPFDP--- 681

  Fly   755 LIVIRSLVPGGVAQLDGRLIPGDRLLFVNSINLENASLDQAVQALKGASKGVVRIGVAKPL--PM 817
             |:|..|...|:|:..|.:..|||:|.:||::|:...|.:|:..|:.|.: .|.:.:.|.|  |:
  Rat   682 -IIISGLTKRGLAERTGAIHVGDRILAINSVSLKGRPLSEAIHLLQVAGE-TVTLKIKKQLDRPL 744

  Fly   818 TDNSLKACSNASTTSEETLDAQPS-------PPALPTV--APPAMPPSASMG------------A 861
            ......:.|.||...|:..:|...       .||:|:|  |..:...||:.|            |
  Rat   745 LPRQSGSLSEASDVDEDPPEALKGGLLTTHFSPAVPSVDSAVESWGSSATEGGFGGSGSYTPQVA 809

  Fly   862 EPDLIP-DWRN 871
            ...:.| :||:
  Rat   810 VRSVTPQEWRS 820

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PatjNP_477342.1 L27 12..70 CDD:295425
PDZ_signaling 154..226 CDD:238492 19/73 (26%)
PDZ_signaling 318..400 CDD:238492 23/90 (26%)
PDZ_signaling 557..643 CDD:238492 24/96 (25%)
PDZ_signaling 726..807 CDD:238492 26/88 (30%)
Grip2NP_612544.2 PDZ_signaling 51..133 CDD:238492 22/85 (26%)
PDZ_signaling 153..236 CDD:238492 13/96 (14%)
PDZ_signaling 251..334 CDD:238492 24/86 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 371..450 22/88 (25%)
PDZ_signaling 456..544 CDD:238492 27/138 (20%)
PDZ_signaling 557..640 CDD:238492 17/82 (21%)
PDZ_signaling 657..737 CDD:238492 26/84 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 745..769 5/23 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 786..863 7/35 (20%)
PDZ_signaling 941..1020 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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