DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Patj and Grid2ip

DIOPT Version :9

Sequence 1:NP_477342.1 Gene:Patj / 44100 FlyBaseID:FBgn0067864 Length:871 Species:Drosophila melanogaster
Sequence 2:NP_001152793.1 Gene:Grid2ip / 170935 MGIID:2176213 Length:1203 Species:Mus musculus


Alignment Length:919 Identity:172/919 - (18%)
Similarity:297/919 - (32%) Gaps:311/919 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 PNDFDIDVAGN---LVLSLNGGEVMYDFDEQRSSSHSHSAPGSPDKSGGVGEEPRPQSQNSKGAG 135
            |.||...:.|:   .|:.:..|          ||:|          :||:  .|..|....:|..
Mouse     9 PEDFGFQLGGSGPCFVIEVAEG----------SSAH----------AGGL--RPGDQILEVEGLA 51

  Fly   136 VADLYATDYAQIQAIELVNDGTGL--GFGIIGARNSGVIVKTI-------------------LPG 179
            |..|     ::.:.:.|......:  ..|::.....|....|.                   |.|
Mouse    52 VGGL-----SRERIVRLARRCPRVPPSLGVLPGPEGGPTALTAAWLTRRFGRSLPLSRELLRLAG 111

  Fly   180 G----VADKDGRLRSGDHILQIGDVNLHEMVS-EQVAAVLRQSGTHVRLVVARPVEQSVPTPQYA 239
            |    ...::.|.::.:...|:.|:....:.: |||...|:|.....|      |::.|.|....
Mouse   112 GPRPDAVHRERRRKAQEFSCQVDDILGDRLTAKEQVFTALKQFAAEQR------VDELVWTLTLV 170

  Fly   240 LEPGTAVVPT----RVLVDPAELERY--LISTGY------------------------PEIFGES 274
            | |..|..|.    |:.:......|:  ::|.|.                        ||....|
Mouse   171 L-PSEAQGPVLDNLRIFIPKKHRARFDEVVSQGLLGKLCRARRAQGAQRLRRSRSEERPERLLVS 234

  Fly   275 STAST---------PQTTTEDDRFVYRGETSMLIDPNIDLEELLALPETEKLQVELKKDANGLGI 330
            :.||.         |:..|.    :..|.|.               |...:..|.:.|.....|.
Mouse   235 TRASAAPRRPDEPPPRKATS----LLGGRTG---------------PGGPRRTVRVYKGNKSFGF 280

  Fly   331 TIAGYVCEKEELSGIFVKSVSPGSAADLSGRIRVNDRIIEVDGQSLQGYSNHQAVELLKKSGQVV 395
            |:.|:       ..::::||.|||.|: :..::..|||:.::|..::..|:.:.|.:|:.||.:.
Mouse   281 TLRGH-------GPVWIESVLPGSPAE-NASLKSGDRILFLNGLDMRNCSHDKVVSMLQGSGAMP 337

  Fly   396 NLRLERYLRGPKFEQLQQAIAANDKLPSSAPGTPSRAPMPTPVATTS----SATTTPSRSITREL 456
            .|.:|   .||       ...|:|   |.:..:|:||...|.:...:    |:.....|:.:::|
Mouse   338 TLVVE---EGP-------VPFASD---SDSLDSPTRASALTSLQWVADILPSSIRVQGRTFSQQL 389

  Fly   457 EEEALPAPEAFMTTPPSVTTMTTTTLSSFGAGKQLVAVRDSLDGSTKIIPTEVVPLADKTEAKNS 521
            :.         :.|||          ..:|..:.|.......:..|.|:  :|.|:.| |.||. 
Mouse   390 DH---------LLTPP----------ERYGVCRALERFFQHRNIDTLIV--DVYPVLD-TPAKQ- 431

  Fly   522 GVITRHKYYTDPELSDDAETEIIRKWQKIVGSDVEVIVAQIKKFAVGGLGISL----EGTVDV-- 580
             |:.:..|                  |.:...:.|:...:|..|    ||.:.    |.::|:  
Mouse   432 -VLWQFLY------------------QLLTYEEQELCQEKIACF----LGYTAMTEPESSLDLEP 473

  Fly   581 EGGREVRPHHYIRSIL--------------------------PDGPVG-VNGVLRSGD--ELLEV 616
            |...|..|....||.|                          |:.|:. :.|..::||  .|.|.
Mouse   474 ESTPEPTPEPQPRSSLRASSMCRRSLRSQGLETSLSCGPGDCPEMPLPLIPGERQAGDGTSLPET 538

  Fly   617 NGERLLGMNHLEVVAILKELPLDVRMVCGRNRNSSLLP-----FSDDTLKKLSNNFENLLPATDR 676
            ...:::...:.|:.:.|............::|.|..:|     ....||..:|      .| :||
Mouse   539 PNPKMMSAVYAELESRLNSSFKGKIGTMSKSRASPPVPSLVGTSGPRTLSGVS------WP-SDR 596

  Fly   677 LVKAKSDGSLATAGSVADGDSVAAAAASFSKLKSRSLEPLTGLAMWSSQPQIIELVKGDRGLGFS 741
            |:.:.....|.:.|..:...|.:...||....::.|.:|..|.....|.|.              
Mouse   597 LLPSPCYDPLCSGGLASPSSSESHPYASLDSSRAPSPQPGLGSIHADSPPS-------------- 647

  Fly   742 ILDYQDPLDPNDTLIVIRSLVPGGVAQLDGRLIPGDRLLFVNSINLENASLDQAVQALKGASKGV 806
                .||:.|                       |..|.||..|..:.:...|:.:.||  :.:..
Mouse   648 ----PDPIRP-----------------------PSRRKLFAFSRPVRSRDTDRFLDAL--SEQLG 683

  Fly   807 VRIGVAKPL--PMTD---------------NSLKACSNASTTSEE--------TLDAQPSPPALP 846
            .|:.:....  |..|               |...:.|...::|||        ..|..|.||   
Mouse   684 PRLSIVDDFLTPENDYEEMSFHDDQGSFVTNERSSASECVSSSEEGSSLTYSSISDHIPPPP--- 745

  Fly   847 TVAPPAMPP 855
             ::||..||
Mouse   746 -LSPPPPPP 753

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PatjNP_477342.1 L27 12..70 CDD:295425
PDZ_signaling 154..226 CDD:238492 15/97 (15%)
PDZ_signaling 318..400 CDD:238492 21/81 (26%)
PDZ_signaling 557..643 CDD:238492 21/120 (18%)
PDZ_signaling 726..807 CDD:238492 12/80 (15%)
Grid2ipNP_001152793.1 PDZ_signaling 9..69 CDD:238492 17/86 (20%)
HN_L-delphilin-R1_like 122..201 CDD:259820 18/85 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 215..270 10/73 (14%)
PDZ_signaling 269..342 CDD:238492 21/80 (26%)
HN_L-delphilin-R2_like 378..457 CDD:259821 21/124 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 466..541 15/74 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 563..586 3/22 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 611..656 12/85 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 710..821 13/48 (27%)
FH2 812..1180 CDD:280362
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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