DRSC/TRiP Functional Genomics Resources

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Protein Alignment Patj and Pdzd3

DIOPT Version :9

Sequence 1:NP_477342.1 Gene:Patj / 44100 FlyBaseID:FBgn0067864 Length:871 Species:Drosophila melanogaster
Sequence 2:NP_573489.2 Gene:Pdzd3 / 170761 MGIID:2429554 Length:498 Species:Mus musculus


Alignment Length:497 Identity:100/497 - (20%)
Similarity:157/497 - (31%) Gaps:191/497 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   152 LVNDGTGLGFGII-GARNSGVIVKTILPGGVADKDGRLRSGDHILQIGDVNLHEMVSEQVAAVLR 215
            :|.|..|.||.:. |:|  |.....:..||.|::.| :..|..:|::...::.::...|:...|.
Mouse   160 VVKDEGGFGFSVTHGSR--GPFWLVLSAGGAAERAG-VPPGARLLEVNGASVEKLTYNQLNRKLW 221

  Fly   216 QSGTHVRLVVARPVEQSVPTPQYALEPGTAVVPTRVLVDPAELERYLISTGYPEIFGESSTASTP 280
            |||..|.|:||                            ..|:|......|.|            
Mouse   222 QSGDQVTLLVA----------------------------GLEVEEQCHQLGMP------------ 246

  Fly   281 QTTTEDDRFVYRGETSMLIDPNIDLEELLALPETEKLQVELKKDANGLGITIAGYVCEKEELS-- 343
                             |..|   |.|..|||...:. :.::|...|.|..:.    |::.|.  
Mouse   247 -----------------LAAP---LAEGWALPAKPRC-LNIEKGPEGFGFLLR----EEKGLDGR 286

  Fly   344 -GIFVKSVSPGSAADLSGRIRVNDRIIEVDGQSLQGYSNHQAVELLKKSGQVVNLRLERYLRGPK 407
             |.|:..|.||..||.:| ::..||::.|.|:|:.|..:.:.|..::..|..|:|    .:..|:
Mouse   287 LGQFLWDVDPGLPADKAG-MKAGDRLVAVAGESVDGLGHEETVSRIRAQGSCVSL----IVVDPE 346

  Fly   408 FEQLQQAIAANDKLPSSAPGTPSRAPMPTPVATTSSATTTPSRSITRELEEEALPAPEAFMTTPP 472
            .::....:..:..|  ....|...||   |:|.|..                 ||..:   |..|
Mouse   347 ADRFFSMVRLSPLL--FLENTEIAAP---PLAETKD-----------------LPVED---TVEP 386

  Fly   473 SVTTMTTTTLSSFGAGKQLVAVRDSLDGSTKIIPTEVVPLADKTEAKNSGVITRHKYYTDPELSD 537
            |                       .|.||.:..                       .|..|.   
Mouse   387 S-----------------------GLAGSCQCF-----------------------LYPGPG--- 402

  Fly   538 DAETEIIRKWQKIVGSDVEVIVAQIKKFAVGGLGISLEGTVDVEGGREVRPHHYIRSILPDGPVG 602
                                          ||.|..|   ..|..|    |..:|..:.|.|...
Mouse   403 ------------------------------GGYGFRL---CCVASG----PCLFISQVTPGGSAA 430

  Fly   603 VNGVLRSGDELLEVNGERLLGMNHLEVVAILKEL--PLDVRM 642
            ..| |:.||.:|||||..:.|.:.|:.:..|.|.  ||.:::
Mouse   431 RAG-LQVGDTVLEVNGYPVGGDSELDRLQQLTEAEPPLCLKL 471

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PatjNP_477342.1 L27 12..70 CDD:295425
PDZ_signaling 154..226 CDD:238492 20/72 (28%)
PDZ_signaling 318..400 CDD:238492 23/84 (27%)
PDZ_signaling 557..643 CDD:238492 25/88 (28%)
PDZ_signaling 726..807 CDD:238492
Pdzd3NP_573489.2 PDZ_signaling 47..127 CDD:238492
PDZ_signaling 155..232 CDD:238492 21/74 (28%)
PDZ 260..345 CDD:214570 23/94 (24%)
PDZ_signaling 407..471 CDD:238492 22/71 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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