DRSC/TRiP Functional Genomics Resources

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Protein Alignment Patj and Lnx2

DIOPT Version :9

Sequence 1:NP_477342.1 Gene:Patj / 44100 FlyBaseID:FBgn0067864 Length:871 Species:Drosophila melanogaster
Sequence 2:NP_542985.4 Gene:Lnx2 / 140887 MGIID:2155959 Length:687 Species:Mus musculus


Alignment Length:726 Identity:152/726 - (20%)
Similarity:231/726 - (31%) Gaps:268/726 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 PGSPDKSGGV--------------GEEP---RPQSQNSKGA-GVADLYATDYAQIQAIEL--VND 155
            |...|.||.|              .|||   .|..:.|..| .|....:....:|..||:  .|.
Mouse   176 PPETDCSGTVPGERNLTPASLPVWTEEPGLDNPAFEESAAADSVQQPLSLPEGEITTIEIHRSNP 240

  Fly   156 GTGLGFGIIGARNS---GVIVKTILPGGVADKDGRLRSGDHILQIGDVNLHEMVSEQVAAVLRQS 217
            ...||..|:|...:   .::::.:...||..:||||.:||.|||:.:.::..:......|||.|.
Mouse   241 YIQLGISIVGGNETPLINIVIQEVYRDGVIARDGRLLAGDQILQVNNYDISNVSHNHARAVLSQP 305

  Fly   218 GTHVRLVVARPVEQSVPTPQYALEPGTAVVPTRVLVDPAELERYLISTGYPEIFGESSTASTPQT 282
            .:.::|.|.|                               ||.         ||..:.:....:
Mouse   306 CSTLQLTVLR-------------------------------ERR---------FGSRANSHADGS 330

  Fly   283 TTEDDRFVYRGETSMLIDPNIDLEELLALPETEKLQVEL-KKDA-NGLGITIAGYVCEKEELSGI 345
            ...|:.|                            ||.| |:|: ..|||.:.    .:.:..|:
Mouse   331 APRDEVF----------------------------QVLLHKRDSTEQLGIKLV----RRTDEPGV 363

  Fly   346 FVKSVSPGSAADLSGRIRVNDRIIEVDGQSLQGYSNHQAVELLKKSGQVVNLRLERYLRGPKFEQ 410
            |:..:..|..|...||:..|||::.::|..|:..:...|.::::.||:.|||.:.|         
Mouse   364 FILDLLEGGLAAQDGRLNSNDRVLAINGHDLKHGTPELAAQIIQASGERVNLTIAR--------- 419

  Fly   411 LQQAIAANDKLPSSAPGTPSRAPMPTPVATTSSATTTPSRSITRELEEEALPAPEAFMTTPPSVT 475
                           ||.|.                 ||..     ..||.....:....|||  
Mouse   420 ---------------PGKPQ-----------------PSNG-----SREAGAHSSSNHAQPPS-- 445

  Fly   476 TMTTTTLSSFGAGKQLVAVRDSLDGSTKIIPTEVVPLADKTEAKNSGVITRHKYYTDPELSDDAE 540
                                .|..||.|          |.|..    |..:.|:.|         
Mouse   446 --------------------HSRPGSHK----------DLTRC----VTCQEKHIT--------- 467

  Fly   541 TEIIRKWQKIVGSDVEVIVAQIKKFAVGGLGISLEGTVDVEGGREVRPHH---YIRSILPDGPVG 602
                                 :||.....||::      |.|||..:...   ::.|:.|.|.:.
Mouse   468 ---------------------VKKEPHESLGMT------VAGGRGSKSGELPIFVTSVPPHGCLA 505

  Fly   603 VNGVLRSGDELLEVNGERLLGMNHLEVVAILKELPLDVRMVCGRNRNSSLLPFSDDTLKKLSNNF 667
            .:|.::.||.||.:||..|..::|.|.||:||.......::                ||.|....
Mouse   506 RDGRIKRGDVLLNINGIDLTNLSHSEAVAMLKASAASPAVI----------------LKALEVQI 554

  Fly   668 -ENLLPATDRLVKAKSDGSLATAGSVADGDSVAAAAASFSKLKSRSLEPLTGLAMWSSQPQI--- 728
             |....||:....|.|:...               .||:|          ....||...|..   
Mouse   555 AEEAAQATEEQPSAFSENEY---------------DASWS----------PSWVMWLGLPSALHS 594

  Fly   729 ---IELVKGDRG-LGFSILDYQDPLDPNDTLIVIRSLVPGGVAQLDGRLIPGDRLLFVNSINLEN 789
               |.|.:...| .||||:...:....|.... |:::|.|..|..||||..||.::.||.::...
Mouse   595 CHDIVLRRSYLGSWGFSIVGGYEENHTNQPFF-IKTIVLGTPAYYDGRLKCGDMIVAVNGLSTVG 658

  Fly   790 ASLDQAVQALK 800
            .|....|..||
Mouse   659 MSHSALVPMLK 669

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PatjNP_477342.1 L27 12..70 CDD:295425
PDZ_signaling 154..226 CDD:238492 21/74 (28%)
PDZ_signaling 318..400 CDD:238492 25/83 (30%)
PDZ_signaling 557..643 CDD:238492 25/88 (28%)
PDZ_signaling 726..807 CDD:238492 25/82 (30%)
Lnx2NP_542985.4 mRING-HC-C3HC3D_LNX2 46..90 CDD:319694
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 145..175
NPXY motif 207..210 1/2 (50%)
PDZ 229..315 CDD:214570 25/85 (29%)
PDZ_signaling 336..418 CDD:238492 26/113 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 417..454 15/114 (13%)
PDZ_signaling 463..539 CDD:238492 27/111 (24%)
PDZ_signaling 596..680 CDD:238492 24/75 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19964
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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