DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Patj and Patj

DIOPT Version :9

Sequence 1:NP_477342.1 Gene:Patj / 44100 FlyBaseID:FBgn0067864 Length:871 Species:Drosophila melanogaster
Sequence 2:XP_038965114.1 Gene:Patj / 140581 RGDID:1565362 Length:1858 Species:Rattus norvegicus


Alignment Length:940 Identity:284/940 - (30%)
Similarity:406/940 - (43%) Gaps:299/940 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 SADISSALQQIEAVKKGIDESDDPKLQMQTAESLSTILGILQDPVFRTIVHVQDSLSELNAQLAQ 68
            :|:....||.::.::..:.|..|....    |.||.....|:.|:|..|:.:|.|:.:|..||:.
  Rat     6 AAEKMQVLQVLDRLRGKLQEKGDTTQN----EKLSAFYETLKSPLFNQILTLQQSIKQLKGQLSH 66

  Fly    69 HPSMLPNDFDIDVAGNLVL---SLNGGEVMYDFDEQRSSSHSHSAP-----GSPD---------- 115
            .||....:||....|.||.   |:..|.......   |.:.|.|.|     |:.|          
  Rat    67 IPSDCSANFDFSRKGLLVFTDGSITNGNAHRPCS---SITASESLPWTQRSGNEDFTSVIQQMAQ 128

  Fly   116 ------------KSGGVG------------------EEPRP------------------------ 126
                        .:||:|                  :|..|                        
  Rat   129 GRHIEYIDIERPSTGGLGFSVVALRSQSLGLIDIFVKEVHPGSVADRDQRLKENDQILAINDTPL 193

  Fly   127 -------------------------------QSQNSKGAGVADLYAT-DYAQIQAIELVNDGTGL 159
                                           ||:.|..:....|..| .:...:.:||:|||:||
  Rat   194 DQNISHQQAIALLQQATGSLRLVVAREVGHTQSRTSTSSADTTLPETVRWGHTEDVELINDGSGL 258

  Fly   160 GFGIIGARNSGVIVKTILPGGVADKDGRLRSGDHILQIGDVNLHEMVSEQVAAVLRQSGTHVRLV 224
            ||||:|.::|||:|:||:|||:||:||||::|||||:||..|:..|.|||||.|||..|..||::
  Rat   259 GFGIVGGKSSGVVVRTIVPGGLADRDGRLQTGDHILKIGSTNVQGMTSEQVAQVLRNCGNSVRML 323

  Fly   225 VAR-PVEQ---SVPTPQYALEPGTAVVPTRVL-VDPAELERYLISTGYPEIFGESSTASTPQTTT 284
            ||| ||.:   :.|||. :|.....||.||.| .|.:..|.|                       
  Rat   324 VARDPVGEIAVTPPTPA-SLPVALPVVATRTLGSDSSPFETY----------------------- 364

  Fly   285 EDDRFVYRGETSMLIDPNIDLEELLALPETEKLQVELKKDANGLGITIAGYV--CEKEELSGIFV 347
                             |::|               :|||...|||.|.|||  ....|.|||:|
  Rat   365 -----------------NVEL---------------VKKDGQSLGIRIVGYVGTAHPGEASGIYV 397

  Fly   348 KSVSPGSAADLSGRIRVNDRIIEVDGQSLQGYSNHQAVELLKKSGQVVNLRLER---YLRGPKFE 409
            ||:.|||||..:|:|:|||:|:.|||.::||::|...||:|:.:||||:|.|.|   .|....||
  Rat   398 KSIIPGSAAYHNGQIQVNDKIVAVDGVNIQGFANQDVVEVLRNAGQVVHLTLVRRKTSLSASPFE 462

  Fly   410 QLQQAIAANDKLPSSAPGTPSRAPMPTPVATTSSATTTPSRSITRELEEEALPAPEAFMTTPPSV 474
            |           |||                             ||...|           ||.|
  Rat   463 Q-----------PSS-----------------------------REAVAE-----------PPEV 476

  Fly   475 TTMTTTTLSSFGAGKQLVAVRDSLDGSTKIIPTEVVPLADKTEAKNSGVITRHKYYTDPELSDDA 539
            ..:|.:......:..:...:.:.||...|    :.|...:|.:.           |.: ::....
  Rat   477 PELTGSLKPETNSRMEAEEIGERLDNLRK----DTVQALEKPDV-----------YPE-DIPGCP 525

  Fly   540 ETEIIRKWQKIVGSDVEVIVA----------QIKKFA----VGGLGISLEGTVDVEGGREVRPHH 590
            |.|:..:|:.::|.|.||:||          :::|::    :..|.:.:|  ||...|     ||
  Rat   526 ENELKSRWENLLGPDYEVMVATLDTQIADDEELQKYSKLLPIHTLRLGME--VDSFDG-----HH 583

  Fly   591 YIRSILPDGPVGVNGVLRSGDELLEVNGERLLGMNHLEVVAILKELPLDVRMVCGRNRNSSLLPF 655
            ||.||.|.|||....:|:..||||||||.:|.|.:..|.|:.|||:|....:||.|..      |
  Rat   584 YISSIAPGGPVDTLNLLQPEDELLEVNGVQLYGKSRREAVSFLKEVPPPFTLVCCRRL------F 642

  Fly   656 SDDTLKKLSNNFENLLPATDRLVKAKSDGSLATAGSVADGDSVAAAAASFSKLKSRSLEPLTGLA 720
            .|:.........|   |:   |::|:.|.|:..:....||:                      ||
  Rat   643 DDEASVDEPRTVE---PS---LLEAEVDRSVDVSTEDDDGE----------------------LA 679

  Fly   721 MWSSQPQIIELVKGDRGLGFSILDYQDPLDPNDTLIVIRSLVPGGVAQLDGRLIPGDRLLFVNSI 785
            :||.:.:.:||||..:|||||||||||||||..::|||||||..|||:..|.|:|||||:.||..
  Rat   680 LWSPEVKTVELVKDCKGLGFSILDYQDPLDPMRSVIVIRSLVADGVAERSGELLPGDRLVSVNEF 744

  Fly   786 NLENASLDQAVQALKGASKGVVRIGVAKPL 815
            :|:||:|.:||:.||....|||.:|:.|||
  Rat   745 SLDNATLAEAVEVLKAVPPGVVHLGICKPL 774

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PatjNP_477342.1 L27 12..70 CDD:295425 15/57 (26%)
PDZ_signaling 154..226 CDD:238492 45/71 (63%)
PDZ_signaling 318..400 CDD:238492 42/83 (51%)
PDZ_signaling 557..643 CDD:238492 36/99 (36%)
PDZ_signaling 726..807 CDD:238492 47/80 (59%)
PatjXP_038965114.1 L27_2 8..65 CDD:312549 13/56 (23%)
PDZ_signaling 135..218 CDD:238492 45/83 (54%)
PDZ_signaling 248..325 CDD:238492 10/77 (13%)
PDZ_signaling 366..450 CDD:238492 27/86 (31%)
CtpA <391..>511 CDD:223864 24/122 (20%)
PDZ_signaling 572..636 CDD:238492 28/63 (44%)
PDZ 684..773 CDD:214570 37/88 (42%)
PDZ_signaling 1074..1165 CDD:238492
PDZ 1244..1329 CDD:214570
PDZ 1471..1578 CDD:214570
PDZ_signaling 1590..1670 CDD:238492
PDZ_signaling 1731..1816 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 98 1.000 Domainoid score I7010
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003499
OrthoInspector 1 1.000 - - otm44956
orthoMCL 1 0.900 - - OOG6_103252
Panther 1 1.100 - - O PTHR19964
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1763
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
109.770

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