DRSC/TRiP Functional Genomics Resources

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Protein Alignment Patj and Gm20498

DIOPT Version :9

Sequence 1:NP_477342.1 Gene:Patj / 44100 FlyBaseID:FBgn0067864 Length:871 Species:Drosophila melanogaster
Sequence 2:NP_001296776.1 Gene:Gm20498 / 105940408 MGIID:5141963 Length:182 Species:Mus musculus


Alignment Length:95 Identity:32/95 - (33%)
Similarity:52/95 - (54%) Gaps:9/95 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   314 TEKLQVELKKDANGLGITIAG-----YVCEKEELSGIFVKSVSPGSAADLSGRIRVNDRIIEVDG 373
            ||: ::.|.:..:|||..|.|     ||...   |||:|..:....||...||::..|:|:.|:|
Mouse    10 TEE-EINLTRGPSGLGFNIVGGTDQQYVSND---SGIYVSRIKEDGAAAQDGRLQEGDKILSVNG 70

  Fly   374 QSLQGYSNHQAVELLKKSGQVVNLRLERYL 403
            |.|:...:..||:|.:.:|..|:||::..|
Mouse    71 QDLKNLLHQDAVDLFRNAGCAVSLRVQHRL 100

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PatjNP_477342.1 L27 12..70 CDD:295425
PDZ_signaling 154..226 CDD:238492
PDZ_signaling 318..400 CDD:238492 29/86 (34%)
PDZ_signaling 557..643 CDD:238492
PDZ_signaling 726..807 CDD:238492
Gm20498NP_001296776.1 PDZ_signaling 13..97 CDD:238492 29/86 (34%)
COX16 100..164 CDD:372923 1/1 (100%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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