DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Patj and whrna

DIOPT Version :9

Sequence 1:NP_477342.1 Gene:Patj / 44100 FlyBaseID:FBgn0067864 Length:871 Species:Drosophila melanogaster
Sequence 2:XP_002665968.3 Gene:whrna / 100334777 ZFINID:ZDB-GENE-091118-27 Length:939 Species:Danio rerio


Alignment Length:855 Identity:182/855 - (21%)
Similarity:282/855 - (32%) Gaps:288/855 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 FDEQRS-----SSHSHSAPGSPDKSGGVGEEPRPQSQNSKGAGVADLYATDYAQIQAIELVNDGT 157
            ||:..|     .|..|:..|.||     |.:....|..:.||..............:|...:|||
Zfish    96 FDQYTSEGLYLKSEIHARNGDPD-----GAQEGANSSPTHGANFPASQVALRGSPDSISTSSDGT 155

  Fly   158 -------------------------------GLGFGIIGARNSGV--IVKTILPGGVADKDGRLR 189
                                           ||||.|.|....||  .|..:.||.:|:|:| ||
Zfish   156 ATLIPLLGRNFLPEPPGEIRQVILKRHKSNEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEG-LR 219

  Fly   190 SGDHILQIGDVNLHEMVSEQVAAVLRQSGTHVRLVVARPVEQSVPTPQYALEPGTAVVPTRVLVD 254
            .||.|:::.|.....:.......||:  |:....:..|.|.: :|.........|.|.|....|.
Zfish   220 MGDQIMKVNDKVFDRVTHADAVKVLK--GSKKLCMSVRSVGR-IPGGYITNHVYTWVDPQGRSVS 281

  Fly   255 PAELERYLISTGYPEIFGESSTASTPQTTTEDDRFVYRGETSMLIDPNIDLEELLALPETEKLQV 319
            |.           |::..|..:|:..::.::       |.:.|         :||...:.:|:.:
Zfish   282 PP-----------PDLLAEHRSATLRRSNSQ-------GRSHM---------QLLQDGDEKKVNL 319

  Fly   320 ELKKDANGLGITIAGYVCEKEELSGIFVKSVSPGSAADLSGRIRVNDRIIEVDGQSLQGYSNHQA 384
            .| .|...||:.|.|   ..|...||::..|..||||:..| |:|.|:|:||:|:|.....:.:|
Zfish   320 VL-DDGRSLGLMIRG---GAEYSLGIYITGVDRGSAAECGG-IKVGDQILEVNGRSFLSIPHDEA 379

  Fly   385 VELLKKSGQVVNLRLERYLRGPKFEQL---QQAIAANDKLPSSAPGTPSRAPMPTPVAT------ 440
            |.:||.|..:: :.::...|.|....:   .:.||::....|||..:.:...:....:|      
Zfish   380 VRVLKSSHHLM-MTVKDVGRLPHTRTVVGETKWIASSQISDSSASSSVTGISLDQGASTSAKGGF 443

  Fly   441 ---------TSSATTTPSRSITRELEEEALPAPEAFMTTPPSVTTMTTTTLSSFGAGKQLVAVRD 496
                     |.|:....||::   |||:|     ..:.|.|...||          |..:...||
Zfish   444 YKGVAGSQVTLSSLVNQSRAM---LEEQA-----RHLLTEPERQTM----------GYYIQEYRD 490

  Fly   497 SLDGSTKIIPTEVVPLAD--KTEAKNS------GVITRHKYYTDPELSDDAETEIIRKWQKIVGS 553
            ...|..::    |:.|.:  .|.||.|      |::|       |:                   
Zfish   491 GHVGVEQL----VMALFELFNTHAKFSLLSEVRGIVT-------PQ------------------- 525

  Fly   554 DVEVIVAQIKKFAVGGLGISLEGTVDV----EGGREVRPHHYIRSILPD------GPVGVNGVLR 608
            |||       ||.    |:.|...:|.    :||.......:.....||      .....|..|.
Zfish   526 DVE-------KFD----GLVLRREIDALKARQGGGAGFQDSFSMVSYPDTLASSSASFMTNTTLS 579

  Fly   609 S--GDELLEVNGERLLGMNHLEVVAILKELPLDVRMVCGRNRNSSLLP-FSDDTLKKLSNNFENL 670
            |  .|.:.|.|||:                        |...:|:.|| .|.|.:...|::..:.
Zfish   580 SARNDGVAENNGEQ------------------------GSLEHSNALPDISLDEVHSTSDSPPSF 620

  Fly   671 LPATDRLVKAKSDGSLATAGSVADGDSVAAAAASFSKLKSRSLEPLTGLAMWSSQPQIIELVKGD 735
            .|.....::.:                 .:..|:.||..|.|          |||          
Zfish   621 KPPPPPGLQRR-----------------PSRKATLSKRPSSS----------SSQ---------- 648

  Fly   736 RGLGFS------ILDYQDPLDPNDTLIVIRSLVPGGVAQLDGRLIPGDRLLFVNSINLENASLDQ 794
            .||.|:      ..:.:.|..|.      ..:.|.|..::|   :|..:|..|:.          
Zfish   649 SGLYFTAPSRSHTRESKHPKAPK------AFMSPPGTLKID---VPASQLSVVSQ---------- 694

  Fly   795 AVQALKGASKGVVRIGVAKPLPMTDNSLKACSNASTTSEETLDAQPSPPALPTV-APPAMPPSAS 858
                        ..||   |.|...:..||        :....:.|.||..|.| |||..||...
Zfish   695 ------------HPIG---PFPRVQSPNKA--------KPAQSSSPIPPPAPNVPAPPGPPPPPP 736

  Fly   859 MGAEPDLIPD 868
            ....|...||
Zfish   737 PPLPPPSCPD 746

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PatjNP_477342.1 L27 12..70 CDD:295425
PDZ_signaling 154..226 CDD:238492 26/104 (25%)
PDZ_signaling 318..400 CDD:238492 28/81 (35%)
PDZ_signaling 557..643 CDD:238492 17/97 (18%)
PDZ_signaling 726..807 CDD:238492 11/86 (13%)
whrnaXP_002665968.3 HN_L-whirlin_R1_like 25..102 CDD:259822 2/5 (40%)
PDZ_signaling 174..255 CDD:238492 23/83 (28%)
PDZ_signaling 314..394 CDD:238492 29/85 (34%)
HN_L-whirlin_R2_like 459..538 CDD:259823 30/137 (22%)
PDZ_signaling 848..919 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3528
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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