DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Patj and pdzk1

DIOPT Version :9

Sequence 1:NP_477342.1 Gene:Patj / 44100 FlyBaseID:FBgn0067864 Length:871 Species:Drosophila melanogaster
Sequence 2:XP_031752326.1 Gene:pdzk1 / 100145801 XenbaseID:XB-GENE-1013787 Length:621 Species:Xenopus tropicalis


Alignment Length:631 Identity:132/631 - (20%)
Similarity:227/631 - (35%) Gaps:201/631 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   155 DGTGLGFGIIGARNS-GVIVKTILPGGVADKDGRLRSGDHILQIGDVNLHEMVSEQVAAVLRQSG 218
            :|.|.||.:...|:. |.:|:::.||..|:|.| |:.||.::::....:.:....:|.|:::.||
 Frog    16 EGKGFGFYLRIERDEVGHLVRSVEPGSSAEKAG-LKDGDRVMKVNGKFVDDKEHAEVVALIKDSG 79

  Fly   219 THVRLVV--------ARPVEQSVPTPQYALEPGTAVVPTRVLVDPAE-LER-----YLISTGYPE 269
            |.|.|.|        .:..|.:..:.|.|.:|.......:.|.:..: |:|     |||..    
 Frog    80 TTVTLEVLDKTAYENTKKKEDNKNSNQPAKQPEAPQPGAQPLANGGKALKRRPRLCYLIKE---- 140

  Fly   270 IFGESSTASTPQTT----------------------TEDDRFV---------------------- 290
              |.||...:.:||                      .:|||.:                      
 Frog   141 --GNSSYGFSLKTTKCENGIFLSALVPNGIAAKAGVKDDDRIIEVNGKNVEDSTHDKLAKMLKES 203

  Fly   291 ----------------YRGETSMLIDPNIDLEELLALPETEKLQVELKKDANGLGITIAGYVCEK 339
                            ::.:|..:.....::|.|.:.|.|    ||||||.||.|.    |:.::
 Frog   204 GGKIMFLVSDKATDEYFKSQTMAITADKANVELLPSKPRT----VELKKDTNGYGF----YLRQE 260

  Fly   340 EELSGIFVKSVSPGSAADLSGRIRVNDRIIEVDGQSLQGYSNHQAVELLKKSGQVVNLRLERYLR 404
            :...|.|:..:..||.|: ..:::..|||:.|:|:.::...:.:.|::::|.|....|.:     
 Frog   261 KNRKGHFIMEIDSGSPAE-KAKLQDYDRIVAVNGECVEAKDHEEVVKVIQKGGDKTTLLI----- 319

  Fly   405 GPKFEQLQQAIAANDKLPSSAPGTPSRAPMPTPVATTSSATTTPSRSITRELEEEALPAPEAFMT 469
                     |....|::.|.|..:|......|.....||:            :|||.|||....:
 Frog   320 ---------ADKKTDEMYSLAGVSPYLYLQETQGEIKSSS------------KEEATPAPAVVPS 363

  Fly   470 TPPSVTTMTTTTLSSFGAGKQLVAVRDSLDGSTKIIPTEVVPLADKTEAKNSGVITRHKYYTDPE 534
            ..|:.|.....                         |:.|.|...:|.|..:|. .:||    |.
 Frog   364 QTPTPTVAPAQ-------------------------PSAVEPKKPETPAAPTGG-QKHK----PR 398

  Fly   535 LSDDAETEIIRKWQKIVGSDVEVIVAQIKKFAVGGLGISLEGTVDVEGGREVRPHHYIRSILPDG 599
            |.         |.||  |::              |.|..|....|.       |..::..:|..|
 Frog   399 LC---------KLQK--GNN--------------GYGFHLNAIKDT-------PGLFMNQVLKGG 431

  Fly   600 PVGVNGVLRSGDELLEVNGERLLGMNHLEVVAILKELPLDVRMVCGRNRNSSLLPFSDDTLKKLS 664
            ...|.|: ::.|.|:||||..:...::.:|:..:||          .....:||..|.:......
 Frog   432 SADVAGI-KNDDVLVEVNGVNMEKESYEDVLIKIKE----------TKGILTLLVASQEAYDYFK 485

  Fly   665 NNFENLLPATDRLVKAKSDGSLATAGSVADGDSVAAAAASFSKLKS 710
            .   ..:|.|..|....|:        |:...|.||.|::.||.::
 Frog   486 G---QKIPITASLADPVSE--------VSPSSSAAAPASTASKARA 520

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PatjNP_477342.1 L27 12..70 CDD:295425
PDZ_signaling 154..226 CDD:238492 23/79 (29%)
PDZ_signaling 318..400 CDD:238492 24/81 (30%)
PDZ_signaling 557..643 CDD:238492 18/85 (21%)
PDZ_signaling 726..807 CDD:238492
pdzk1XP_031752326.1 PDZ_signaling 7..87 CDD:238492 22/71 (31%)
PDZ_signaling 132..211 CDD:238492 11/84 (13%)
PDZ_signaling 241..320 CDD:238492 26/101 (26%)
gliding_GltJ <348..>390 CDD:411345 15/78 (19%)
PDZ 396..475 CDD:214570 26/125 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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