DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sns and VTCN1

DIOPT Version :9

Sequence 1:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster
Sequence 2:XP_011540445.2 Gene:VTCN1 / 79679 HGNCID:28873 Length:332 Species:Homo sapiens


Alignment Length:241 Identity:49/241 - (20%)
Similarity:92/241 - (38%) Gaps:65/241 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   763 ITVVVEYG---------TTIKSVSENIVVNPGEDAMLSCTVEGK-PLTEEHVKWERVGY------ 811
            |.:::.:|         ||:.|..     |.|||.:||||.|.. .|::..::|.:.|.      
Human    73 IALIIGFGISGRHSITVTTVASAG-----NIGEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHE 132

  Fly   812 ------------DMTVKTSTTFAN----GTSYLHIKDAKREDVGNFRC-VADNRVDNPTNRDILL 859
                        :|....:..||:    |.:.|.:|:.:..|.|.::| :..::.....|.:...
Human   133 FKEGKDELSEQDEMFRGRTAVFADQVIVGNASLRLKNVQLTDAGTYKCYIITSKGKGNANLEYKT 197

  Fly   860 IVKFAPEIAKTPTLLRAASGTGERGRLPCRA-QGSPKPQFIWR----QDKKDLPINRTYKYEVEE 919
            .....||:...   ..|:|.|     |.|.| :..|:|..:|.    |......::.| .:|:..
Human   198 GAFSMPEVNVD---YNASSET-----LRCEAPRWFPQPTVVWASQVDQGANFSEVSNT-SFELNS 253

  Fly   920 R----KIDSLTYESTLIVDKVAPADYGAYECVARNELGEAVETVRL 961
            .    |:.|:.|..|:         ...|.|:..|::.:|...:::
Human   254 ENVTMKVVSVLYNVTI---------NNTYSCMIENDIAKATGDIKV 290

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snsNP_001036532.1 I-set 73..170 CDD:254352
Ig 76..155 CDD:299845
IG_like 186..279 CDD:214653
Ig 197..279 CDD:299845
IG_like 296..376 CDD:214653
Ig 300..361 CDD:299845
Ig 380..454 CDD:299845
IG_like 490..573 CDD:214653
Ig 501..560 CDD:299845
Ig 584..666 CDD:299845
IG_like 585..666 CDD:214653
I-set 678..767 CDD:254352 1/3 (33%)
IGc2 692..757 CDD:197706
Ig 788..849 CDD:143165 17/84 (20%)
Ig 885..960 CDD:143165 17/83 (20%)
FN3 967..1051 CDD:238020
VTCN1XP_011540445.2 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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