DRSC/TRiP Functional Genomics Resources

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Protein Alignment sns and nectin3a

DIOPT Version :9

Sequence 1:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster
Sequence 2:XP_017206634.2 Gene:nectin3a / 793240 ZFINID:ZDB-GENE-130530-670 Length:550 Species:Danio rerio


Alignment Length:327 Identity:74/327 - (22%)
Similarity:122/327 - (37%) Gaps:76/327 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   130 KQGIYNLRI--SNASINDDADYQCQVGPARLNSAIRANAKLTVISPPASIEIKGYSHNSKVEVR- 191
            |..::::.|  ......|...|.|::....|.: ::|:..:.|:     :|.|.|.....:.:. 
Zfish   104 KPSVHDVSIVLQGVGFADIGMYTCKMVTFELGN-MQASTNVDVM
-----VEPKVYVSPGSLSLTA 162

  Fly   192 -ENQDLQLKCIVANAKPAAQIVWYRGNVEYKPEKREDTVEESTAKRFTTT-SSLKLKPGPDDDYT 254
             :.:.|...|.....:|||::.|     |.....:...|.:|..:..||| ....|.|.......
Zfish   163 DDGETLVATCTAERGRPAAEVFW-----ESDLPGQTAVVTQSEPEGTTTTLVHYVLAPTRASHGR 222

  Fly   255 EYTCQARHKALSPDMPMRATVQLSVLYPPGPPYIEG---YSAGETLRRGQTVELMCRSRGGNPPA 316
            ..:|..||.|||.|  .|...:|:|.:.|....|.|   :..|:     :.|:|.|:: ..||||
Zfish   223 SLSCVVRHPALSRD--FRIPYRLNV
FFVPDVMVIGGKNVWYVGQ-----KDVQLDCKA-NANPPA 279

  Fly   317 QL-IWYK------------NGSQIRMAYRTSGRLSENIYTFTAEAGDNKARFRCEASNVMSQN-- 366
            .. :|.:            |||.              ::|...||.|: .::|||..|.:.||  
Zfish   280 LFYLWTRLDALMPAGVNMHNGSL--------------VFTRPLEATDS-GQYRCEVQNDVGQNFH 329

  Fly   367 ----------PLKAEVELSVLFA-----PTHVTVMGPTEARVGDIVPLTCTTAPSNPPAEIKWMV 416
                      |..|....:..|:     .|.:|:..|...|.....|    |..|...|::..:|
Zfish   330 DVPFLVLDPPPTTAAPTTTTTFSKSLHPDTSLTITAPINQRAHFSSP----TRSSPRDADLSTLV 390

  Fly   417 GG 418
            ||
Zfish   391 GG 392

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snsNP_001036532.1 I-set 73..170 CDD:254352 7/41 (17%)
Ig 76..155 CDD:299845 5/26 (19%)
IG_like 186..279 CDD:214653 23/95 (24%)
Ig 197..279 CDD:299845 22/82 (27%)
IG_like 296..376 CDD:214653 23/104 (22%)
Ig 300..361 CDD:299845 18/73 (25%)
Ig 380..454 CDD:299845 11/39 (28%)
IG_like 490..573 CDD:214653
Ig 501..560 CDD:299845
Ig 584..666 CDD:299845
IG_like 585..666 CDD:214653
I-set 678..767 CDD:254352
IGc2 692..757 CDD:197706
Ig 788..849 CDD:143165
Ig 885..960 CDD:143165
FN3 967..1051 CDD:238020
nectin3aXP_017206634.2 Ig 49..146 CDD:325142 7/42 (17%)
Ig 149..245 CDD:325142 25/102 (25%)
Ig 264..325 CDD:325142 19/81 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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