DRSC/TRiP Functional Genomics Resources

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Protein Alignment sns and bcam

DIOPT Version :9

Sequence 1:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster
Sequence 2:NP_001352817.1 Gene:bcam / 767689 ZFINID:ZDB-GENE-060929-620 Length:611 Species:Danio rerio


Alignment Length:551 Identity:127/551 - (23%)
Similarity:227/551 - (41%) Gaps:111/551 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   372 VELSVLFAPTHVTVMGPTEARVGDIVPLTCT-TAPSNPPAEIKWMV----GGRQVRNATSKTIVS 431
            |.|.|..|...|.|........||.|.|.|| |..:.....::|.:    |||  :....|:.|.
Zfish    18 VVLQVCLASVTVKVNPEMHVLKGDTVMLPCTYTTSAEAAVAVQWFIEFADGGR--KQVAYKSSVG 80

  Fly   432 PEGGWTT---------TSNITAV-VEPNKRSLVVICHGLNMQLTENVVST----HTINVLYPPAP 482
            .:.|..|         :.||:.| |:.:|:   .||     |:|...|.|    ..:.|...|..
Zfish    81 SDAGTFTDRYTIEKDMSLNISQVTVDDHKK---FIC-----QVTAGPVGTAESATEVKVFSAPEK 137

  Fly   483 PLI-----SGYMEGQIIPAGSVQKLLCVSSGGNPLATLTWYKNDKRI---------NSVIRAADK 533
            |::     ..:::..|..:..|.|  |:|..|:|...:.|:|:|..:         ..:|....|
Zfish   138 PMVVPNPQKIFVDSSISSSAEVGK--CISRNGHPEPRIIWFKDDNPLPEEKKKTEKTYMIHFLVK 200

  Fly   534 SVSAEITILANV------SDNQAQYRCEASNSATEIPLFQSTT----LSVHFAPETVKIRIEPE- 587
            ..|...|:.:.:      :|.::.|.|....:..:..:.|.::    :|:.::.|.|..:::.| 
Zfish   201 EASGLYTLTSMLYMHLTKADAKSVYHCIVEYTMPDNQIKQESSDNFNISLQYSTENVFFKVKNEG 265

  Fly   588 ELRPGMEATIICDSSSSNPPAKLSWWKDGIPIEGINNTSKPGLWGGTVSTLEFRVNVTQEMNGQV 652
            .::.|.:..:.|: :..||..:..::|....:||:         |||:.    :.::|:|.:| .
Zfish   266 PIKEGDDVVMQCE-TDGNPQPQFDFFKGEKLLEGL---------GGTLK----KKSITREDSG-T 315

  Fly   653 YTCQS----ANEALQRSAHEAVSLDVLYRPKFVPPPSSTAVGVEGESLQVSLQTRANPTPVTYKW 713
            |.|::    |:..:|  .|:.::::|.|....|.|.....|. :|:.:::..:.:|:... |.:|
Zfish   316 YKCEAMDYEADSKVQ--LHKTLNINVHYIDITVEPEGPLVVS-KGDHVELQCKAKASEAH-TLQW 376

  Fly   714 TKDGTTIPQDGDHRIFADGGSLNFTRLHRDDAGIYSC-SASNSQGG--ATLNITVVVEYGTTIKS 775
            |||...:...|   :||. .|:...     |.|:|.| .|..|..|  ..:||||.|:....|.:
Zfish   377 TKDSKELSNTG---VFAK-ESVTLA-----DGGVYVCVGAVPSVPGLQKQVNITVNVKGQPEIDA 432

  Fly   776 VSENIVVNPGEDAMLSCTVEGKPLTE----------EHVKWERVGYDMTVK-TSTTFANGT---S 826
            ..:.:|...|....|:|:..|.|..:          ..||..||...:|:: |:....:|.   :
Zfish   433 PVKGLVDKEGGMVTLNCSALGHPAPQFIWTPSGKESVTVKGNRVISTVTLEATAAVLKDGVICEA 497

  Fly   827 Y-LHIKDAKREDVGNFRCVADNRVDNPTNRD 856
            | .|.:|:|     ||....|.....|.|.|
Zfish   498 YNTHGRDSK-----NFEVKLDQAKPTPANSD 523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snsNP_001036532.1 I-set 73..170 CDD:254352
Ig 76..155 CDD:299845
IG_like 186..279 CDD:214653
Ig 197..279 CDD:299845
IG_like 296..376 CDD:214653 2/3 (67%)
Ig 300..361 CDD:299845
Ig 380..454 CDD:299845 22/88 (25%)
IG_like 490..573 CDD:214653 18/101 (18%)
Ig 501..560 CDD:299845 15/73 (21%)
Ig 584..666 CDD:299845 18/86 (21%)
IG_like 585..666 CDD:214653 18/85 (21%)
I-set 678..767 CDD:254352 25/91 (27%)
IGc2 692..757 CDD:197706 17/65 (26%)
Ig 788..849 CDD:143165 18/75 (24%)
Ig 885..960 CDD:143165
FN3 967..1051 CDD:238020
bcamNP_001352817.1 V-set 31..131 CDD:311561 27/109 (25%)
Ig 138..234 CDD:325142 18/97 (19%)
Ig_3 267..320 CDD:316449 15/67 (22%)
Ig_2 351..422 CDD:316418 21/81 (26%)
Ig_3 428..499 CDD:316449 14/70 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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