DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sns and robo2

DIOPT Version :9

Sequence 1:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster
Sequence 2:XP_021337127.1 Gene:robo2 / 60309 ZFINID:ZDB-GENE-001019-1 Length:1595 Species:Danio rerio


Alignment Length:1305 Identity:274/1305 - (20%)
Similarity:426/1305 - (32%) Gaps:371/1305 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   430 VSPEGGWTTTSNITAVVEPNKRSLVVIC------------HGLNMQLTENVVSTHTINVLYPPAP 482
            ||||..      ..|||......|::||            .|...:|.:.            .:|
Zfish     3 VSPERA------RCAVVLAGPPLLLIICVLWILCSDSVDAQGQGSRLRQE------------DSP 49

  Fly   483 PLISGYMEGQIIPAGSVQKLLCVSSGGNPLATLTWYKNDKRINSVIRAADKS---------VSAE 538
            |.|..:....|:..|....|.| .:.|.|..|:.|||:.:|:.:     ||.         .|..
Zfish    50 PRIVEHPSDLIVSKGEPATLNC-KAEGRPTPTVEWYKDGERVET-----DKDDPRSHRMLLPSGS 108

  Fly   539 ITILANV-----SDNQAQYRCEASNSATEIPLFQSTTLSVHFAPETVKIRIEPEE--LRPGMEAT 596
            :..|..|     ..::..|.|.|.|...|.   .|...|:..|......|..|.:  :..|..|.
Zfish   109 LFFLRIVHGRRSKPDEGAYVCVARNYLGEA---VSRNASLEVALLRDDFRQNPTDVVVAAGEPAI 170

  Fly   597 IICDSSSSNPPAKLSWWKDGIPIEGINNTSKPGLWGGTVSTLEFRVNVTQEMNGQVYTCQSANEA 661
            :.|.....:|...:.|.||.:.|:..::..|  :.||     :..::.|::.:..:|.|...|..
Zfish   171 LECVPPRGHPEPTIYWKKDKVRIDEKDDRIK--IRGG-----KLMISNTRKSDAGMYICVGTNMV 228

  Fly   662 LQRSAHEAVSLDVLYRPKFVPPPSSTAVGVEGESLQVSLQTRANPTPVTYKWTKDGTTIPQDG-D 725
            .:|.: |...:.|..||.|:..|.:..| :|.|:::...|.:.:|.| :.:|.||...||:.. |
Zfish   229 GERDS-ETAQVTVFERPTFLRRPINQVV-LEEEAVEFRCQVQGDPQP-SIRWKKDDVEIPRGRYD 290

  Fly   726 HRIFADGGSLNFTRLHRDDAGIYSCSASNSQGGATLNITVVVEYGTTIKSVSENIVVNP------ 784
            .:...|..:|...:....|.|.::|.|.|..|....:.|:.|.....   .:...|:.|      
Zfish   291 MKFDKDDFTLRIKKATASDEGTFTCVAENRVGKMEASATLTVRARPV---AAPQFVIRPRDQIVA 352

  Fly   785 -GEDAMLSCTVEGKPLTEEHVKWERVGY------DMTVKTSTTFA-NGTSYLHIKDAKREDVGNF 841
             |..|...|..:|.|  :..|.|::.|.      :...:.::.|: :.:..|.|...:|.|.|.:
Zfish   353 QGRTASFPCETKGNP--QPAVFWQKEGSQNLLFPNQPQQPNSRFSVSPSGDLTITTVQRADAGYY 415

  Fly   842 RC----------------VADNRVDNPTNRDILLIVKFAPEIAKTPTLLRAASGTGERGRLPCRA 890
            .|                |.|...|.|           .|.|.:.|.  ....|......|.|.|
Zfish   416 ICQALTVAGSILAKAQLEVTDVLTDRP-----------PPIIRQGPA--NQTLGVDSVALLRCHA 467

  Fly   891 QGSPKPQFIWRQDKKDLPINRTYKYEVEERKIDSLTYESTLIVDKVAPADYGAYECVARNELGEA 955
            .|.|.|...|.:|...| :.:..:..:::  :.||..:...:      :|.|.|.|||.:..||.
Zfish   468 SGEPVPTISWLKDGVSL-LGKDPRMSLQD--LGSLQIKGLRL------SDSGIYTCVAASSSGET 523

  Fly   956 VETVRLEI--------------TSQPDPPLSLNILNVTHDTVTLAWTPGFDGGLKASYRV--RYR 1004
            ..:..||:              ...|.||....:.:||.::|:|:|.||..|....|..|  .:.
Zfish   524 SWSAFLEVKEAGSLVVVKDRDENELPGPPSKPQVTDVTKNSVSLSWQPGLPGASAISTYVIEAFS 588

  Fly  1005 MADREQYKYIDGLPNSHKLTIGGLRMNTLYLFSVMSWNELGQSSYLPDLARAETKEAPPPS---- 1065
            .:....::.:.....:.:.||.|||.||:|||.|.:.|..|.|...|......|::..||:    
Zfish   589 QSVSNSWQTVADHAKTTQYTIKGLRPNTIYLFMVRAVNVQGLSDPSPMSEPVRTQDISPPAQGVD 653

  Fly  1066 --HPASSLG------GGP----PTTSQT-------------------PLGGTS------------ 1087
              |....||      ..|    |||.|.                   .:.|.|            
Zfish   654 HRHVQKELGEVIVRLHNPVVLSPTTIQVTWTVDRQSQFIQGYRVLYRQMSGLSSPGAWQTQDVKV 718

  Fly  1088 ----GMLLVGVGAGIVVVL-----LNVFVIGCCLHKRNEKRLKRGLELMPAELTEDSSNTPNLVI 1143
                .|:|..:..|||..:     .|.|. |.....|..:..:......|.::|..:....|...
Zfish   719 PSERSMVLSALKKGIVYEIKVRPYFNEFQ-GMDSESRTARTTEEAPSAPPQQVTVLTVGNQNSTS 782

  Fly  1144 IGISL----AAFGFLLVNASLVAWFFVHQRRKKVAETTNQPAKTATI-EMYAPSSYNDTVTGETL 1203
            |.||.    |.....::....: |...::.|..|.:|.:...::..: .:.|...|...|...|.
Zfish   783 ISISWDPPPAEHQNGIIQEYKI-WCLGNETRFHVNKTVDAAIRSVVVGGLQAGVQYRVEVAASTS 846

  Fly  1204 SSVSEKSESYS------------NEGSSQPEYIDEV----------------------------- 1227
            :.|..|||..:            :..:|..|.|.:|                             
Zfish   847 AGVGVKSEPQTIIIGKDFRDVMISRNNSITEQITDVVKQPAFIAGIGGACWVILMGFSIWLYWRR 911

  Fly  1228 -RKKAASTYLVEGSDMPPPRYQKDGTLPVIYPNNVVNACTLPHPRHNNGSAAIHMTRDDQMLISK 1291
             ::|..|.|.|:.....|                                 |:...|.|..|:|.
Zfish   912 KKRKGLSNYAVQSFTFTP---------------------------------AVTFQRVDGGLMSN 943

  Fly  1292 GVYIPSPSPAPPPDGSYYNMNSDRYLSYPPMEYPAALDFTAQPMPMAHLQPMTVTSLATN---GG 1353
            |   ..|......|..|..:..    |:||                         ||..|   ||
Zfish   944 G---SRPGLLNASDSGYPWLAD----SWPP-------------------------SLPVNSGSGG 976

  Fly  1354 PT--LIGNGSV--AAVAGGSGT-LRRGIL--------RGVVGVPQP--DVTHHTSTVGGSPMQML 1403
            |.  ..|.|.|  :|.|..:|| |..|.:        :|..|.|.|  ..|.:.:|      |:|
Zfish   977 PNDLSFGRGDVMPSAQADKTGTMLSDGAIYSSIDFTTKGGFGSPSPASQATPYATT------QIL 1035

  Fly  1404 H--DLH--PVNLSASTLTTS-------TTLNGSLP---TATATLPRQPHGILKDPNRNKQQQQQQ 1454
            |  .:|  .|:|..:...||       .:|..|||   :...||...|...|.|...|:....|.
Zfish  1036 HSNSIHELAVDLPEAQWKTSLQAKQEMASLGYSLPDKNSCNNTLLFIPDYRLADGLSNRMPHNQS 1100

  Fly  1455 QQQQQQQQLQHQQQLLNASLVGVGVPVSAPLGSLQILNLPPASGGLGNNLLMTTNAFDPTTVGLS 1519
            |......  .|.....:.||                      |||.|.....|.....||.:..|
Zfish  1101 QDFSTTS--SHNSSDRSNSL----------------------SGGKGGKKKKTKANVKPTKMNGS 1141

  Fly  1520 SFGAV 1524
            ::..|
Zfish  1142 NWANV 1146

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snsNP_001036532.1 I-set 73..170 CDD:254352
Ig 76..155 CDD:299845
IG_like 186..279 CDD:214653
Ig 197..279 CDD:299845
IG_like 296..376 CDD:214653
Ig 300..361 CDD:299845
Ig 380..454 CDD:299845 7/23 (30%)
IG_like 490..573 CDD:214653 22/96 (23%)
Ig 501..560 CDD:299845 18/72 (25%)
Ig 584..666 CDD:299845 17/83 (20%)
IG_like 585..666 CDD:214653 17/82 (21%)
I-set 678..767 CDD:254352 24/89 (27%)
IGc2 692..757 CDD:197706 18/65 (28%)
Ig 788..849 CDD:143165 16/83 (19%)
Ig 885..960 CDD:143165 19/74 (26%)
FN3 967..1051 CDD:238020 27/85 (32%)
robo2XP_021337127.1 Ig1_Robo 49..148 CDD:143317 26/107 (24%)
Ig 156..240 CDD:325142 18/91 (20%)
I-set 244..332 CDD:254352 24/89 (27%)
Ig4_Robo 354..443 CDD:143203 19/101 (19%)
IG 450..531 CDD:214652 22/91 (24%)
FN3 549..642 CDD:238020 28/92 (30%)
FN3 673..758 CDD:238020 15/85 (18%)
FN3 767..859 CDD:238020 19/92 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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