DRSC/TRiP Functional Genomics Resources

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Protein Alignment sns and il1rapl1a

DIOPT Version :9

Sequence 1:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster
Sequence 2:XP_021334418.1 Gene:il1rapl1a / 568868 ZFINID:ZDB-GENE-061013-249 Length:1520 Species:Danio rerio


Alignment Length:449 Identity:81/449 - (18%)
Similarity:133/449 - (29%) Gaps:172/449 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   764 TVVVEYGTTIKSVSENIVVNPGEDAMLSCTVEGKPLTEEHVKWERVGYDMTVKTSTTFANGTSYL 828
            ||..:.||.  .:::.:|:.|               ..||:.|.|:..::.:...:|.       
Zfish   186 TVPDKIGTV--KLTQAVVLLP---------------KHEHLVWGRLPSNVPMSPGSTV------- 226

  Fly   829 HIKDAKREDVGNFRCVADNRVDNPTN-----RDILLIVKFAPEIAKTPTLLRAASGTGERGRLPC 888
                                :..|||     ||||:                        |||..
Zfish   227 --------------------IVEPTNSKAMPRDILV------------------------GRLVV 247

  Fly   889 RAQGSP-KPQFIWRQDKKDLPINRTYKYEVEERKIDSLTYE------STLIVDKVAPADYGAYEC 946
            ...|.. .|..:.....|.:.:.|..|.......|.|..:|      .||:.:|   :|.....|
Zfish   248 PLWGDRWVPMTVMNPTNKVITLKRNSKMADVFPCIASEDFEIFQGLHITLVENK---SDDSCNSC 309

  Fly   947 VARNELGEAVETVRLEITSQPDPPLSLNILNVTHDTVTLAWTP---------------------- 989
            .|.:                    :..|:||:..:.:.:.|:.                      
Zfish   310 AADH--------------------IDKNLLNLGLEEIDVNWSQISDDCKSQLTQLLADYQDIFSK 354

  Fly   990 -GFDGGLKASYRVRYRMADREQYKY-IDGLPNSHKLTI----------GGLRMNTLYLFS--VMS 1040
             ..|.|....|..|.|:.|...::. ...:|.:|...:          |.:|.::....|  ||.
Zfish   355 HPLDCGEATGYVHRIRLTDNRPFRLPYRRVPPAHYEKLRQVLTDMEEKGIIRKSSSEYASPLVMV 419

  Fly  1041 WNELGQSSYLPDL--ARAET-KEAPPPSHPASSLGGGPPTTSQTPLGGTSGMLLVGVGAGIVVVL 1102
            |.:.|......|.  ..|.| |:|.|..|.|..|..         |||......:.:.:|...:.
Zfish   420 WKKDGGLRICTDFRWLNARTMKDAHPLPHQADCLAA---------LGGNCFFSTMDLTSGFYNIP 475

  Fly  1103 LN-------VFVIGCCLHKRNEKRLKRGLELMPAELTEDSSNTPNLVIIGISLAAFGFL 1154
            ::       .|.....||:.|  |:.:||...||....        :::||    ||.|
Zfish   476 MSEEDKKYTAFTTPLGLHEYN--RMPQGLCNSPASFMR--------MMLGI----FGDL 520

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snsNP_001036532.1 I-set 73..170 CDD:254352
Ig 76..155 CDD:299845
IG_like 186..279 CDD:214653
Ig 197..279 CDD:299845
IG_like 296..376 CDD:214653
Ig 300..361 CDD:299845
Ig 380..454 CDD:299845
IG_like 490..573 CDD:214653
Ig 501..560 CDD:299845
Ig 584..666 CDD:299845
IG_like 585..666 CDD:214653
I-set 678..767 CDD:254352 2/2 (100%)
IGc2 692..757 CDD:197706
Ig 788..849 CDD:143165 5/60 (8%)
Ig 885..960 CDD:143165 16/81 (20%)
FN3 967..1051 CDD:238020 19/119 (16%)
il1rapl1aXP_021334418.1 retropepsin_like 46..137 CDD:133136
RT_LTR 403..579 CDD:238825 34/141 (24%)
RNase_HI_RT_Ty3 701..823 CDD:260006
rve 1068..1176 CDD:307008
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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