DRSC/TRiP Functional Genomics Resources

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Protein Alignment sns and chl1a

DIOPT Version :9

Sequence 1:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster
Sequence 2:XP_021325513.1 Gene:chl1a / 566148 ZFINID:ZDB-GENE-090313-201 Length:1310 Species:Danio rerio


Alignment Length:1341 Identity:267/1341 - (19%)
Similarity:444/1341 - (33%) Gaps:424/1341 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   285 PPYIEGYSAGETLRRGQTVEL--------MCRSRGGNPPAQLIWYKNGSQIRMAYRTSGRLSENI 341
            ||::|..........|..:.|        .|.:: |||.....|.|:|..............||.
Zfish    25 PPHVEQLPTITAQTSGTIIALPYDERYIFKCEAK-GNPRPTFRWTKDGMDFDPHKDPQVTTEENT 88

  Fly   342 YTFTAEAGDNK----ARFRCEASNVMSQNPLKAEVELSVLFAPTH-VTVMGPTEARVGDIVPLTC 401
            .||......:|    .::||.|||.:. .....|.|..|...|.. ...:.|.....||.|.|.|
Zfish    89 GTFEIPNKKDKVKYQGKYRCYASNKLG-TATSEEAEFIVPMVPKFPKEKIEPIVVTEGDSVVLEC 152

  Fly   402 TTAPSNPPAEIKWMVGGRQVRNATSKTIVSPEGGWTTTSNITAVVEPNKRSLVVICHGLNMQLTE 466
            ......||.::.||                        :|....:|.|:|        ::|.|:.
Zfish   153 NPPQGIPPWQLYWM------------------------TNDLRHIEQNER--------VSMGLSG 185

  Fly   467 NVVSTHTINVLYPPAPPLISGYMEGQIIPAGSVQKLLCVSSGGNPLATLTWYKNDKRINSVIRAA 531
            |:..::|          |:|          .|.....|.:|         ::|    |.:::: .
Zfish   186 NLYFSNT----------LVS----------DSHDDYCCFAS---------FFK----IRTIVQ-K 216

  Fly   532 DKSVSAEITILANVSDNQAQYRCEASNSATEIPLFQSTTLSVHFAPETVKIRIEPEELRPGMEAT 596
            .:.|.....:.|...|..|:...|...|.. :|...|||.                 |:.|.|..
Zfish   217 PRMVLKVKPVDAKQEDGDAKIVQERKPSIL-VPSSHSTTF-----------------LKKGEELE 263

  Fly   597 IICDSSSSNPPAKLSWWKDGIPIEGINNTSKPGLWG-----------GTVSTLEFRVNVTQEMNG 650
            :.| .:...|..::.|.|               :||           |.:.|:.   |:.:|..|
Zfish   264 LEC-IAEGLPTPEVEWIK---------------IWGDLPKRTQIKNFGKLLTIP---NIREEDEG 309

  Fly   651 QVYTCQSANEALQRSAHEAVSLDVLYRPKFVPPPSSTAVGVEGESLQVSLQTRANPTPVTYKWTK 715
            : |.|::.|:..:...|  ..::|...|.:...|..:.:...|..:.::......|.| |..|.:
Zfish   310 K-YMCKAKNQHGEDVHH--FQVEVEEPPSWQKEPLKSQLAWIGSDIHINCSATGKPQP-TITWKR 370

  Fly   716 DGTTIPQDG----DHRIFADGGSLNFTRLHRDDAGIYSCSASNSQGGATLNITVVV--------- 767
            :|.  |.|.    .|::..|  .:...:..:.|..:|.|.|||..|....|..|:|         
Zfish   371 NGK--PLDDFPSTHHKMLDD--RIIILKAEQKDTAVYQCEASNKHGSLLANANVLVMNHPPLILT 431

  Fly   768 ----EYGTTIKSVSENIVVNPGEDAMLSCTVEGKPLTEEHVKWERVGYDMTV--KTSTTFANGTS 826
                ||.|.:           |:..::.|.|...|  ...:.|.|...:.:|  :..:...||: 
Zfish   432 RNYLEYATML-----------GKSVIMDCNVFSSP--PATLNWRREDPEGSVDGERYSLLKNGS- 482

  Fly   827 YLHIKDAKREDVGNFRCVADNRVDNPTNRDILLIVKFAPEIAKTPTLLRAASGTGERGRLPCRAQ 891
             |.|...:.||:|.::|:|:|. :...:....|.:|.:..|.:.|..::...|:  ...|.|:.:
Zfish   483 -LQIHKVEMEDMGQYKCLANNS-EGTASITTELFIKDSTRIVEAPQDMKVIRGS--VAELECQVE 543

  Fly   892 GSP----KPQFIWRQDKKDLPINRTYKYEVEERKIDSLTYESTLIVDKVAPADYGAYECVARNEL 952
            ..|    :.:|:|.:|..::..|.:.:|         .|.|..|.:..|:.:|.|.|.|:.|..|
Zfish   544 CDPSLRRELEFVWLKDGINILSNSSERY---------FTDEGILQIFNVSHSDQGNYTCIVRTSL 599

  Fly   953 GEAVETVRLEITSQPDPPLSLNILNVTHDTVTLAWTPGFDGGLK-ASYRVRYRMADREQYKYIDG 1016
            .:...:..:.:...||||:.|.:.::...:|.|.|....|.... ..:.::|..:..|..|:.|.
Zfish   600 DQDTASAYITVLDVPDPPVELLLSDLKDRSVKLHWVNTSDHNSPITEFIIQYEESHWEPEKWKDL 664

  Fly  1017 L-PNSHKLTIG-GLRMNTLYLFSVMSWNELGQSSYLPDLARAETKEAPPPSHPAS-SLGGGPP-- 1076
            | .:|.|.:.. .|..:..|.|.|::.||:|:|.......|.:|....|..:|.: .:.|..|  
Zfish   665 LRVSSRKFSAPLALYCHINYQFRVIAVNEIGRSHPSMPSGRYKTPPCAPDRNPENIKIEGHLPHQ 729

  Fly  1077 -TTSQTPLGGTSGMLLVGVGAGIVVVLLNVFVIGCCLHKRNEKRLKRGLELMPAELTEDSSNTPN 1140
             ..|..||     :.:...|.|: ...|:..::| ......|:.:||...::        .:||.
Zfish   730 MDISWEPL-----LPVEHNGPGL-EYKLSYRLLG-VEDSWKEQMVKRHSFVV--------RDTPT 779

  Fly  1141 LVIIGISLAAFGFLLVNASLVAWFFVHQRRKKVAETTNQPAKTATIEMYAPSSYNDTVTGETLSS 1205
            .|...:.:.||                          |:..       :||..  ..|||     
Zfish   780 FVPYEVKIQAF--------------------------NRHG-------WAPGP--KVVTG----- 804

  Fly  1206 VSEKSESYSNEGSSQPEYIDEVRKKAASTYLVEGSDMPPPRYQKDGTLPVIYPNN----VVNACT 1266
                   ||.|...             ..:.:||          |.|:|::.|:|    |:|:..
Zfish   805 -------YSGEDFD-------------IWHCLEG----------DATVPLVAPDNVSAEVLNSTL 839

  Fly  1267 L-----PHP----RHNNGSAAIHMTRDDQMLISKGVYIPSPSPAPPPDGSYYNMNSDRYLSYPPM 1322
            |     |.|    |.:.|...::..:...:|.||  .|||...:                    :
Zfish   840 LKVSWSPVPQTTLRGHLGGYTVNYWQTQSLLTSK--KIPSERQS--------------------L 882

  Fly  1323 EYPAALDFTAQPMPMAHLQPMTVTSLATNGGPTLIGNGSVAAVAGGSGTLRRGILRGVVGVPQPD 1387
            ..|.....|..|    .|:|.:..||..|     :.|             |||            
Zfish   883 TIPGNRSHTMVP----GLKPFSEYSLTVN-----VFN-------------RRG------------ 913

  Fly  1388 VTHHTSTVGGSPMQMLHDLHPVNLSASTLTTSTTLNGSLPTATATLPRQPHGILKDPNRNKQ--- 1449
                                  |..:|:..:.||..|        :|.||| .||..|..|.   
Zfish   914 ----------------------NGPSSSPISFTTPQG--------VPEQPH-YLKATNFQKDAIT 947

  Fly  1450 ----QQQQQQQQQQQQQLQHQQQLLNASLVGVGVPVSAPLGSLQILNLPPASGGLGNNLLMTT-- 1508
                ...:.........||:|..:.|.:           ||.|..:|:..|.         ||  
Zfish   948 LVWAPPHETNGHLTGYLLQYQTVVDNET-----------LGELNSVNISGAD---------TTQW 992

  Fly  1509 --------NAFD-----PTTVGLSSFGAVSQAGGI-PVAYT 1535
                    |::.     .|.||..|  |:|:.||. |.|:|
Zfish   993 VLRDLQEDNSYKFYLSACTQVGCGS--AISEKGGTDPAAFT 1031

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snsNP_001036532.1 I-set 73..170 CDD:254352
Ig 76..155 CDD:299845
IG_like 186..279 CDD:214653
Ig 197..279 CDD:299845
IG_like 296..376 CDD:214653 21/91 (23%)
Ig 300..361 CDD:299845 17/72 (24%)
Ig 380..454 CDD:299845 15/74 (20%)
IG_like 490..573 CDD:214653 15/82 (18%)
Ig 501..560 CDD:299845 9/58 (16%)
Ig 584..666 CDD:299845 17/92 (18%)
IG_like 585..666 CDD:214653 17/91 (19%)
I-set 678..767 CDD:254352 21/92 (23%)
IGc2 692..757 CDD:197706 16/68 (24%)
Ig 788..849 CDD:143165 16/62 (26%)
Ig 885..960 CDD:143165 18/78 (23%)
FN3 967..1051 CDD:238020 24/86 (28%)
chl1aXP_021325513.1 Ig 54..125 CDD:325142 19/72 (26%)
Ig 129..222 CDD:325142 27/158 (17%)
Ig 262..331 CDD:325142 15/90 (17%)
Ig 349..422 CDD:325142 19/77 (25%)
IG 440..515 CDD:214652 18/90 (20%)
I-set 520..610 CDD:333254 21/100 (21%)
FN3 614..703 CDD:238020 24/88 (27%)
fn3 717..797 CDD:306538 19/127 (15%)
fn3 826..918 CDD:306538 28/169 (17%)
FN3 930..1016 CDD:238020 23/106 (22%)
FN3 1092..1172 CDD:238020
Bravo_FIGEY 1209..1290 CDD:316405
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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