DRSC/TRiP Functional Genomics Resources

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Protein Alignment sns and lrig1

DIOPT Version :9

Sequence 1:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster
Sequence 2:XP_688817.4 Gene:lrig1 / 560325 ZFINID:ZDB-GENE-031113-23 Length:1022 Species:Danio rerio


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snsNP_001036532.1 I-set 73..170 CDD:254352
Ig 76..155 CDD:299845
IG_like 186..279 CDD:214653
Ig 197..279 CDD:299845
IG_like 296..376 CDD:214653
Ig 300..361 CDD:299845
Ig 380..454 CDD:299845
IG_like 490..573 CDD:214653
Ig 501..560 CDD:299845
Ig 584..666 CDD:299845
IG_like 585..666 CDD:214653
I-set 678..767 CDD:254352
IGc2 692..757 CDD:197706
Ig 788..849 CDD:143165
Ig 885..960 CDD:143165
FN3 967..1051 CDD:238020
lrig1XP_688817.4 LRRNT 31..63 CDD:214470
leucine-rich repeat 63..84 CDD:275380
LRR_RI 77..334 CDD:238064
LRR_8 83..142 CDD:290566
leucine-rich repeat 85..107 CDD:275380
leucine-rich repeat 108..131 CDD:275380
LRR_8 132..191 CDD:290566
leucine-rich repeat 132..155 CDD:275380
leucine-rich repeat 156..180 CDD:275380
leucine-rich repeat 181..203 CDD:275380
LRR_8 202..262 CDD:290566
leucine-rich repeat 204..227 CDD:275380
leucine-rich repeat 228..251 CDD:275380
LRR_8 251..310 CDD:290566
leucine-rich repeat 252..275 CDD:275380
leucine-rich repeat 276..299 CDD:275380
LRR_8 299..358 CDD:290566
leucine-rich repeat 300..323 CDD:275380
leucine-rich repeat 324..347 CDD:275380
leucine-rich repeat 348..372 CDD:275380
LRR_4 373..414 CDD:289563
LRR_8 374..433 CDD:290566
leucine-rich repeat 375..398 CDD:275380
leucine-rich repeat 399..420 CDD:275380
LRRCT 433..481 CDD:214507
Ig_3 485..572 CDD:290638
IG_like 492..586 CDD:214653
I-set 590..680 CDD:254352
Ig_1 607..681 CDD:143240
I-set 684..771 CDD:254352
IGc2 698..761 CDD:197706
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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