DRSC/TRiP Functional Genomics Resources

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Protein Alignment sns and cadm4

DIOPT Version :9

Sequence 1:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster
Sequence 2:XP_005158168.1 Gene:cadm4 / 492787 ZFINID:ZDB-GENE-041114-138 Length:415 Species:Danio rerio


Alignment Length:449 Identity:113/449 - (25%)
Similarity:173/449 - (38%) Gaps:116/449 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   446 VEPNKRSLVVICHGLNMQLTENVVSTHTINVLYPPAPPLISGYMEGQIIPAGSVQKLLCVSSGG- 509
            :.|.:|||::  ...:..|..::|              |:|....||.:.|.:|    .|..|| 
Zfish     1 MRPGQRSLLL--SSSSSLLLRSLV--------------LLSLCPRGQAVQAENV----TVLEGGT 45

  Fly   510 ------------------NPLATLTWYK-----NDKRINSVIRAADKSVSAEITILANVS-DNQA 550
                              ||.....::.     .|.|...|: ...|.|...:|   ||| .::.
Zfish    46 AQISCRLQNYDGSIVVIQNPRRQTLFFNGTRALKDDRFQMVL-FTPKLVRITLT---NVSVSDEG 106

  Fly   551 QYRCEASNSATEIPLFQSTTLSVHFAPETVKIRIEPEELRPGMEATIICDSSSSNPPAKLSWWKD 615
            .|.|:.....|.   .|..||||...||...:.::.|.:..| |..:.|.|..|.|||.|.|.:|
Zfish   107 GYFCQLYTDDTH---HQVATLSVVVPPEVPSVEVKTEAVEGG-EVELTCLSLRSKPPATLRWVRD 167

  Fly   616 GIPIEGINNTSKPGLWGGTVSTLEFRVNVTQEMNGQVYTCQSANEAL---QRSAHEAVSLDVLYR 677
            ...|.|:.:..:.|......:|:  |:.|.::.|....:|::::.||   :|..|  .||||.:.
Zfish   168 RREIPGVISQQENGKTVSVSNTI--RIPVERKDNRAALSCEASHPALVSQKRVRH--YSLDVHFA 228

  Fly   678 P--KFVPPPSSTAVGV--EGESLQVSLQTRANPTPVTYKWTKDGTTIPQDGDHRIFADGGSLNFT 738
            |  |.|||.     |:  ||:||.::.....||.|...:|::...|:|:    |....|..|:.:
Zfish   229 PTVKIVPPQ-----GILREGDSLSLTCSVTGNPLPRDIQWSRVNDTLPE----RAEKTGNILHMS 284

  Fly   739 RLHRDDAGIYSCSASNSQGGATLNITVVV--------------------EY---GTTIKSVSE-N 779
            ||.:...|.|.|.|.|:.|.|..:.|::|                    ||   |..:::.|. .
Zfish   285 RLSQSHNGTYLCQAHNNYGRAADHYTLLVYVSVAQSHPAIAHPNLPSSKEYQDPGAVVETHSAVP 349

  Fly   780 IVVNPGEDAMLSCTV--------------EGKPLTEEHVKWERVGYDMTVKTSTTFANG 824
            ..|..|..|:|..||              :|..||.     |..|.|...:....|.||
Zfish   350 FAVIGGILALLVFTVICVLIVTIWCSVRQKGSYLTH-----EASGLDEHGEVQEAFLNG 403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snsNP_001036532.1 I-set 73..170 CDD:254352
Ig 76..155 CDD:299845
IG_like 186..279 CDD:214653
Ig 197..279 CDD:299845
IG_like 296..376 CDD:214653
Ig 300..361 CDD:299845
Ig 380..454 CDD:299845 3/7 (43%)
IG_like 490..573 CDD:214653 24/107 (22%)
Ig 501..560 CDD:299845 16/83 (19%)
Ig 584..666 CDD:299845 23/84 (27%)
IG_like 585..666 CDD:214653 23/83 (28%)
I-set 678..767 CDD:254352 29/92 (32%)
IGc2 692..757 CDD:197706 20/64 (31%)
Ig 788..849 CDD:143165 13/51 (25%)
Ig 885..960 CDD:143165
FN3 967..1051 CDD:238020
cadm4XP_005158168.1 Ig 36..124 CDD:299845 19/98 (19%)
IG_like 36..115 CDD:214653 17/86 (20%)
Ig 146..225 CDD:299845 24/82 (29%)
Ig_2 232..300 CDD:290606 24/76 (32%)
IG_like 235..313 CDD:214653 26/86 (30%)
4.1m 372..389 CDD:128590 4/21 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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