DRSC/TRiP Functional Genomics Resources

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Protein Alignment sns and side-VI

DIOPT Version :9

Sequence 1:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster
Sequence 2:NP_001036705.1 Gene:side-VI / 4379854 FlyBaseID:FBgn0083950 Length:1087 Species:Drosophila melanogaster


Alignment Length:1395 Identity:284/1395 - (20%)
Similarity:453/1395 - (32%) Gaps:530/1395 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   287 YIEGYSA-GETLR--RGQTVELMC---RSRGGNPPAQLIWYKNGSQIRMAYRTSGRLSENIYTFT 345
            :.:|:.. ||.||  ...:.::.|   .|:..:....::||||...| .:|.|.|          
  Fly    24 HADGFKPDGEILRVLVNSSAQIKCDVGSSQADDKVLLVVWYKNNLPI-YSYDTRG---------- 77

  Fly   346 AEAG-----------DNKARFRCEASNVMSQNPLKAEVELSVLFAPTHVTVMGPTEARVGDIVPL 399
            |.||           :::|.||                        ||                 
  Fly    78 AHAGTPSHWRDEEVLEDRAVFR------------------------TH----------------- 101

  Fly   400 TCTTAPSNPPAEIKWMVGGRQVRNATSKTIVSP----EGGWTTTSNITAVVEPNKRSLVVICHGL 460
                   ..|||:                |::|    :.|             |.|..|      
  Fly   102 -------KEPAEL----------------IINPVKEKDAG-------------NFRCRV------ 124

  Fly   461 NMQLTENVVSTHTINVLYPPAPPLI------------SGYMEGQIIPAGSVQKLLCVSSGGNPLA 513
            :.:|::...|...:.|:.||..|:|            ..|.||     ||:: :.||..||:|..
  Fly   125 DFKLSQTRNSNVNLEVVVPPTQPIIFNERRLRIDSRAGPYEEG-----GSLE-VTCVVYGGSPPP 183

  Fly   514 TLTWYKNDKRINSVI-RAADKSVSAEITILANVS--DNQAQYRCEASN-----SATEIPLFQSTT 570
            |:.|..|.:..|||: ...|.:::::: ::.|:|  ...|.|.|:|||     .||.|      |
  Fly   184 TVIWLMNGQLQNSVVDYTYDGAINSKL-VVRNLSRIHQHAVYTCQASNFHKKYVATNI------T 241

  Fly   571 LSVHFAPETVKIRIEPEELRPGMEATIICDSSSSNPPAKLSWWKDGIPIEGINNTSKPGLWGGTV 635
            :.::..|..|:|....:.:....:..|.|.:..|.||||::||...:.:.|   .|:.....|.|
  Fly   242 IDLYLRPLLVEISFNNQPMSADRKYEIECQAIGSRPPAKITWWMGNLELHG---HSQKVSEDGNV 303

  Fly   636 STLEFRVNVTQEMNGQVYTCQSANEALQRSAHE-AVSLDVLYRPKF-------VPPPSSTAVGVE 692
            ||....:..|:|.:|:..:|::.||.::....| |:.|:|.:.|..       :.|....    |
  Fly   304 STSVLSITPTREDHGKALSCRATNELVRNGIRETAMKLNVFFIPTLQLDLGSNLNPEDIE----E 364

  Fly   693 GESLQVSLQTRANPTPVTYKWTKDGTTIPQDGDHRIFADGGSLNFTRLHRDDAGIYSCSASNSQG 757
            |:.:....:..|||......|..:...|..:....:....|.|....:.|..||.|:|:|||.:|
  Fly   365 GDDVYFECKVHANPAAYKVVWKHNHQIIQHNQRAGVIVSSGDLALQGVTRHQAGNYTCTASNVEG 429

  Fly   758 GATLNIT-VVVEYGTTIKSVSENIV-VNPGEDAMLSCTVEGKPLTEEHVKWERVGYDMTVKTSTT 820
            ....|:. :.|.|....:...:.|. |...|.|.:.|.|:..| ..|:.||   .::.|.:|   
  Fly   430 DGDSNVVELKVMYKPICRPDQKKIYGVARNEAAEIVCEVDAFP-PPENFKW---SFNNTAET--- 487

  Fly   821 FANGTSYLHIKDAKREDVGNFRCVADNRVDNPTNRDILLIVKFAPEIAKTPTLLRAASGTGERGR 885
                                        .|.|                             :.|.
  Fly   488 ----------------------------FDMP-----------------------------QSGF 495

  Fly   886 LPCRAQGSPKPQFIWRQDKKDLPINRTYKYEVEERKIDSLTYESTLIVDKVAPADYGAYECVARN 950
            .|..||||                              :|||      ..|...|:|...|.|.|
  Fly   496 RPHSAQGS------------------------------TLTY------TPVKEMDFGTIMCWADN 524

  Fly   951 ELGEAVE--TVRLEITSQPDPPLSLNILNVTHDTVTLAWTPGFDGGLKASYRVRYRMADREQYKY 1013
            .:|:..|  ...|....:|:.|.:..::|.|.|::.:....|||||::..:.:       |.:..
  Fly   525 NVGQQKEPCVFHLIAAGKPEAPTNCTVVNQTSDSLEVYCIEGFDGGMRQWFLM-------EIFDQ 582

  Fly  1014 IDGLPNSH------KLTIGGLRMNTLYLFSVMSWNELGQSSYLP----DLARAETKEAPPPSHPA 1068
            ..|...::      .|::.||....|:...|.:.|..|:|..:.    .|..||.:.....|:..
  Fly   583 HSGQLQANISAKFAALSVTGLDAGRLFRIYVYAVNGRGRSDAIALDGYTLKAAEKQTVALTSYKG 647

  Fly  1069 SSLGGGPPTTSQTPLGGTSGMLLVGVGAGIVVVLLNVFVIGCCLHKRNEKRLKRGLELMPAELTE 1133
            |:  ..|.....||:      |.:|:..||:|.                                
  Fly   648 SA--QSPDNFELTPI------LSIGIFVGILVA-------------------------------- 672

  Fly  1134 DSSNTPNLVIIGISLAAFGFLLVNASLVAWFFVHQRRK-------KVAETTNQPAKTATIEMYAP 1191
                   :|.|||...|...|..:.......|||...|       ::.:..:.|...:. |||..
  Fly   673 -------IVCIGIGTIAALKLRSHKHQQQQKFVHPNAKFSRPGNLQIKDKISLPLSHSE-EMYDE 729

  Fly  1192 SS-----YNDTVTGE------------TLSSVSE-----KSESYS----------NEGSSQPEYI 1224
            .:     ||: |.||            .||:.||     |..|.|          :.|:.|....
  Fly   730 KNPDVVPYNE-VDGEYKQKSATQTPSGHLSTTSEVEISCKPGSTSGTGIVQANSADSGTYQSSKD 793

  Fly  1225 DEVRKKAAS-TYLVEGSDMPPPRYQKDGTLPVI----------------YPNNVVNACTLPH--- 1269
            ||:.....| |.:..||.....:.|..|.:.|:                :|:.::.. ||||   
  Fly   794 DELHYAELSLTNMPSGSSGASKKGQPMGGVGVVQHVVQQQQQQQQGQVQHPHQLLGG-TLPHGSS 857

  Fly  1270 --------------PRHNNGSAAIHMTRDDQMLISKGVYIPSPSPAPPPDGSYYNMNSDRYLSYP 1320
                          .||...:.              |:..|. ..||||...|            
  Fly   858 MRKLLPTIPATATLQRHKPNAG--------------GMQHPH-QHAPPPTYDY------------ 895

  Fly  1321 PMEYPAALDFTAQPMPMAHLQPMTVTSLATNGGPTLIGNGSVAAVAGGSGTLRRGILRGVVGVPQ 1385
                    |:..:|...|.:.......:.|        ...||.|..|:|:   |:......:..
  Fly   896 --------DYFEEPTIYAQIDAYKTMQVDT--------GVVVAGVGAGAGS---GVNGAGASISS 941

  Fly  1386 PDVTHHT-STVGGSPMQMLHDLHPVNLSASTLTTSTTLNGSLPTATATLPRQPHGILKDPN---- 1445
            |. :|.| |||....:||.                            |||:.|.|....|:    
  Fly   942 PG-SHGTPSTVSPGTVQMY----------------------------TLPQHPGGYHTLPHNHHA 977

  Fly  1446 ------------------RNKQQQQQQ----------------QQQQQQQQLQHQQQLLNASLVG 1476
                              :.:||||||                ||||||||:.|.|.|::::..|
  Fly   978 QQQMAGGPQNSASMMQMMQQQQQQQQQMHHHPASNMPPSYQQHQQQQQQQQMAHGQMLVSSNSSG 1042

  Fly  1477 VG---VPVSAPLGSLQILNLPPASGGLGNN 1503
            :.   ..|::|..||..|:      |:|.:
  Fly  1043 LASTTAAVASPSSSLSGLS------GVGKS 1066

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snsNP_001036532.1 I-set 73..170 CDD:254352
Ig 76..155 CDD:299845
IG_like 186..279 CDD:214653
Ig 197..279 CDD:299845
IG_like 296..376 CDD:214653 18/95 (19%)
Ig 300..361 CDD:299845 16/74 (22%)
Ig 380..454 CDD:299845 10/77 (13%)
IG_like 490..573 CDD:214653 28/90 (31%)
Ig 501..560 CDD:299845 20/66 (30%)
Ig 584..666 CDD:299845 21/81 (26%)
IG_like 585..666 CDD:214653 21/80 (26%)
I-set 678..767 CDD:254352 21/96 (22%)
IGc2 692..757 CDD:197706 17/64 (27%)
Ig 788..849 CDD:143165 9/60 (15%)
Ig 885..960 CDD:143165 16/76 (21%)
FN3 967..1051 CDD:238020 20/89 (22%)
side-VINP_001036705.1 IG_like 35..140 CDD:214653 31/198 (16%)
Ig_3 157..230 CDD:290638 23/79 (29%)
IG_like 165..242 CDD:214653 27/89 (30%)
Ig 265..343 CDD:299845 24/80 (30%)
IG_like 267..343 CDD:214653 24/78 (31%)
IG_like 363..440 CDD:214653 19/80 (24%)
IGc2 364..429 CDD:197706 17/64 (27%)
IG_like 456..532 CDD:214653 29/175 (17%)
Ig_3 456..524 CDD:290638 27/167 (16%)
fn3 545..622 CDD:278470 18/83 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3515
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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