DRSC/TRiP Functional Genomics Resources

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Protein Alignment sns and side-III

DIOPT Version :9

Sequence 1:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster
Sequence 2:NP_001036681.1 Gene:side-III / 4379844 FlyBaseID:FBgn0083949 Length:1689 Species:Drosophila melanogaster


Alignment Length:1269 Identity:239/1269 - (18%)
Similarity:401/1269 - (31%) Gaps:456/1269 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   390 EARVGDIVPLTCTTAPSNPPAE---IKWM------------VGGRQVRNATSKTIVSPEGGWTTT 439
            ||.:|....|.|...|......   :.|.            |.||....|..         |:.|
  Fly    60 EAVLGRTASLPCDIEPEAKDDRVYMVLWFRESAGKPLYSFDVRGRPFEKALY---------WSDT 115

  Fly   440 SN-------ITAVVEPNKRSLVVICHGLNMQLTENVV------------STHTIN--VLYPPAPP 483
            ::       :|. .:|.|.|:.      |:||.:..|            ..|.||  |:.||...
  Fly   116 NSFGPRAYFVTG-QQPAKLSVD------NIQLDDEGVYRCRVDFQNSPTRNHRINLTVIVPPHQI 173

  Fly   484 LISGYMEGQIIPAGSVQKLL--------CVSSGGNPLATLTWYKNDKRINSVIRAADKSVSAEIT 540
            |:.. ..|:.: ||:|..||        |...||.|..|:||....:.:.:   .:..|:...:|
  Fly   174 LVYD-ASGRDV-AGAVGPLLEGDNIVLTCEVRGGRPEPTVTWMNGTRTLEA---GSGVSMGRHVT 233

  Fly   541 I----LANVSDNQAQ--YRCEASNSATEIPLFQSTTLSVHFAPETVKIRIEPEELRPGMEATIIC 599
            :    :|.:|.:...  |||:|||:....|:.:|..:.:...|.:|.:..:.:......:..:.|
  Fly   234 VNRLEVAQISRSALNNTYRCQASNTKLVAPVERSIRIEMLLKPTSVNLTNKLKVFASNTQYNLTC 298

  Fly   600 DSSSSNPPAKLSWWKDGIPIE-GINNTSKPGLWGGTVSTLEFRVNVTQEMNGQVYTCQSANEALQ 663
            ..:.|.|..::.|.::..|.: |:.:||:..  |..:|||.|...  .|.:|.:..|:.:|..||
  Fly   299 IVAGSVPDTEIKWTQNNRPFKRGLLSTSQSN--GRVISTLTFYPQ--PEDDGTMLKCEGSNPRLQ 359

  Fly   664 RSA-HEAVSLDVLYRPKFVPPPSSTAVG--------VEGESLQVSLQTRANPTPVTYKWTKDGTT 719
            .|| .:::.::|:|     ||..:.::|        .||:.:......::||......|:.||..
  Fly   360 NSAIEDSLMMNVIY-----PPQVTLSLGSTLRPDDIKEGDDVYFECHIKSNPKEHRIMWSHDGQP 419

  Fly   720 IPQDGDHRIFADGGSLNFTRLHRDDAGIYSCSASNSQG---GATLNITVVVEYGTTIKSVSENIV 781
            :.|:....|.....||...|:.|..:|.|:|||:|.:|   .|.:|:.  :.|.....|.|..::
  Fly   420 VTQNVSWGIIISTRSLVLQRVGRIHSGFYACSAANDRGETQSAPVNLR--IRYAPVCSSSSITVI 482

  Fly   782 -VNPGEDAMLSCTVEGKPLTEEHVKWERVGYDMTVKTSTTFANGTSYLHIKDAKREDVGNFRCVA 845
             .:..||..:.|.|...| .|...:|             ||:....:..:..      |::..:.
  Fly   483 GASLEEDVPIPCRVNSDP-PEIDFEW-------------TFSTSGEHFEVPS------GHYATIQ 527

  Fly   846 DNRVDNPTNRDILLIVKFAPEIAKTPTLLRAASGTGERGRLPCRAQGSPKPQFIWRQDKKDLPIN 910
            |                        ||:...:.                              :.
  Fly   528 D------------------------PTMTTTSD------------------------------VR 538

  Fly   911 RTYKYEVEERKIDSLTYEST---LIVDKVAPADYGAYECVARNELGEAVETVRLEITSQPDPPLS 972
            ||.   ||..:....:|..|   ||.......|||...|..||.:|:..:....::.....|   
  Fly   539 RTV---VESNETHFESYVETVSELIYTPKGERDYGTLACYGRNAIGKQSDPCVFQVVPAAKP--- 597

  Fly   973 LNILNVTHDTVTLAWTPGFDGGLKASYRVRYRMADREQYKYIDGLPNSHKLTIGGLRMNTLYLFS 1037
                                                                 |.||..||..:.
  Fly   598 -----------------------------------------------------GALRNCTLRPYV 609

  Fly  1038 VMSWNELGQSSYLPDLARAETKEAPPPSHPASSLGGGPPTTSQTPLGGTSGMLLVGVGAGIVVVL 1102
            |.|                            :||.....||                        
  Fly   610 VTS----------------------------ASLNSSNQTT------------------------ 622

  Fly  1103 LNVFVIGCCLHKRNEKRLKRGLELMPAELTEDSSNTPNLVII------------GISLAAFGFLL 1155
                     :|..         :::|.:.....||.|::..:            |.:.||....:
  Fly   623 ---------MHAN---------QILPTQYGRHESNYPHMEYVRERHNSSGGNNNGTAPAAGRNNV 669

  Fly  1156 VNASLVAWFFVHQRR---KKVAETTNQPAKTATIEMYAPSSYNDTVTGETLSSVSEKSESYSNEG 1217
            .|.::.......|.:   |::.:...|..|..|  .:.||        :||:::..:.:  ..:.
  Fly   670 ANKNMRGRTSAGQAKSNNKQLTQQQLQRLKKRT--SFTPS--------QTLAAIERQRQ--RKQL 722

  Fly  1218 SSQPEYIDEVRKKAASTYLVEGSDMPPPRYQKDGTLPVIYPNNVVNACTLP-------------H 1269
            |.|.:.:.:...:|.:|  ..|.|..|     ||:........:..|...|             |
  Fly   723 SQQQQQLQQQHHQATAT--KSGGDNKP-----DGSPAKSSKQRMRRASRDPQIQQQQQHQQQQQH 780

  Fly  1270 PRHNNGSAAIHMTRDDQML---------ISKGVYIPSPSPAPPPDGSYYNMNSDRYLSYPPMEYP 1325
            ..|    ||..:|...:..         :.||    |.|.:.....|..|:||.......|.:| 
  Fly   781 QLH----AATSITSSQRKQAESNLSTSHLGKG----SSSSSRSRRSSSSNINSKSNNGKQPAKY- 836

  Fly  1326 AALDFTAQPMPM---AHLQPMTVTSLATNGGPTLIGNGSVAAVAGGSGTLRRGILRGVVGVPQPD 1387
                |..:...|   .|.|.:..                               |:|.......:
  Fly   837 ----FNKRQKNMHKQKHQQKLKQ-------------------------------LKGTTNEHNSN 866

  Fly  1388 VTHHTSTVGGSPMQMLHDLHPVNLSASTLTTSTTLNGSLP----------TATATL--------- 1433
            :.||.:.:..| ::....|...::.|:....||:.:.|.|          ||||.:         
  Fly   867 IIHHYAALSSS-LRRRKRLAANDILATVAAASTSASLSSPPASSAASLAATATAAVEIEQDVSAV 930

  Fly  1434 --PRQPHGILKDPNRNKQQQQQQQQQQQQQQLQHQQQLLNASLVGVGVPVSAPLGSLQILNLPPA 1496
              |....|     :.||:.::......:|:|.|.|||||         |.:||    ||.|.|.|
  Fly   931 DAPAADSG-----SNNKRSRKSLTILDKQKQQQEQQQLL---------PPNAP----QISNQPVA 977

  Fly  1497 SGGLGNNLLMTTNAFDPTTVGLSSFGAVSQAGGI 1530
            :.. |||:        ..|...|:.|||  |.|:
  Fly   978 AIS-GNNV--------KETAATSAHGAV--AAGV 1000

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snsNP_001036532.1 I-set 73..170 CDD:254352
Ig 76..155 CDD:299845
IG_like 186..279 CDD:214653
Ig 197..279 CDD:299845
IG_like 296..376 CDD:214653
Ig 300..361 CDD:299845
Ig 380..454 CDD:299845 17/85 (20%)
IG_like 490..573 CDD:214653 25/96 (26%)
Ig 501..560 CDD:299845 19/72 (26%)
Ig 584..666 CDD:299845 19/82 (23%)
IG_like 585..666 CDD:214653 19/81 (23%)
I-set 678..767 CDD:254352 25/99 (25%)
IGc2 692..757 CDD:197706 19/64 (30%)
Ig 788..849 CDD:143165 9/60 (15%)
Ig 885..960 CDD:143165 15/77 (19%)
FN3 967..1051 CDD:238020 8/83 (10%)
side-IIINP_001036681.1 IG_like 59..166 CDD:214653 24/121 (20%)
V-set 59..166 CDD:284989 24/121 (20%)
ig 190..268 CDD:278476 20/80 (25%)
IG_like 192..259 CDD:214653 17/69 (25%)
Ig 296..361 CDD:299845 19/68 (28%)
IG_like 391..468 CDD:214653 22/78 (28%)
IGc2 392..454 CDD:197706 18/61 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3515
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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