DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sns and ed

DIOPT Version :9

Sequence 1:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster
Sequence 2:NP_001260013.1 Gene:ed / 33619 FlyBaseID:FBgn0000547 Length:1332 Species:Drosophila melanogaster


Alignment Length:1584 Identity:323/1584 - (20%)
Similarity:519/1584 - (32%) Gaps:493/1584 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 LLAVIVLASAPVPSHAQQQKFRTTPHDLQVLEGAEAMMRCEVANVAGA-------VQWTK----- 106
            |:|::.|:|..:...:           :...|.|:..::|...:...|       .:||.     
  Fly    30 LIALVALSSTTLADES-----------IDTRENADLTLKCRFNDKYEANDFSFFWTRWTANPAQF 83

  Fly   107 DGFALGFSAVIPGFPRYSVLGDRKQGIYNLRISNASIN-DDADYQCQVGPARLNSAIRAN-AKLT 169
            |..|:|...:..|   |.:....::|||:|:|.|.|.| |:..::|::......:.:... ..||
  Fly    84 DNVAIGEVQLSSG---YRLDFQPERGIYDLQIKNVSYNRDNGRFECRIKAKGTGADVHQEFHNLT 145

  Fly   170 VISPPASIEIKGYSHNSKVEVRENQDLQLKCIVANAKPAAQIVWYR-GNVEYKPEKREDTVEEST 233
            |::||....|   |..:.....|::.::|.|......|...|.||| |:....|.    ||.:..
  Fly   146 VLTPPHPPVI---SPGNIAVATEDKPMELTCSSIGGSPDPTITWYREGSNTPLPA----TVLKGG 203

  Fly   234 AKRFTTTSSLKLKPGPDDDYTEYTCQARHKALSPDMPMRATVQLSVLY-------PPGPPYIEGY 291
            .|...|.::|.:.|..:||..:|.|..|::|::....:.||..|:|.|       |..|..:|  
  Fly   204 TKDQPTNATLSIIPRREDDGAKYKCVVRNRAMNEGKRLEATATLNVNYYPRVEVGPENPLRVE-- 266

  Fly   292 SAGETLRRGQTVELMCRSRGGNPPAQLIWYKNGSQIRMAYRTSGRLSENIYTFTAEAGDNKARFR 356
                   |.:|.:|.|..........:.|.:||..|.         |..::|....:..:..::.
  Fly   267 -------RDRTAKLECNVDAKPKVPNVRWNRNGRFIS---------SSLVHTIHRVSVQDAGKYT 315

  Fly   357 CEASNVMSQNPLKAEVELSVLFAPTHVTVMGPTEARVGDIVPLTCTTAPSNPPAEIKWMVGGRQV 421
            |.|.|.:.:.. :.|:.|.:|:.|..|......||..||.|.:.|....:..|..|:|:...   
  Fly   316 CIADNGLGKTG-EQELILDILYPPMVVIESKTREAEEGDTVTIRCNVTANPAPVTIEWLKEN--- 376

  Fly   422 RNATSKTIVSPE----GGWTTTSNITAVVEPNKRSLVVICHGLN------MQLTENV-VSTHTIN 475
                     ||:    |...|.:::.|....|     .||..:|      |:.:|.| .||..:.
  Fly   377 ---------SPDFRYNGDVLTLTSVRADHAGN-----YICRAVNIMQSQGMERSERVGNSTVALL 427

  Fly   476 VLYPPAPPLISGYMEGQIIPAGSVQKLLC-VSSGGNPLATLTWYKNDKRINSVIRAADKSVSAEI 539
            |.:.|....|:  ....::..|:...|.| .:..|.|:....|:          |..|...|:..
  Fly   428 VRHRPGQAYIT--PNKPVVHVGNGVTLTCSANPPGWPVPQYRWF----------RDMDGEFSSTQ 480

  Fly   540 TILANVSD---------NQAQYRCEASNSATEIPLFQSTTLSVHFAPE-TVKIRIEPEELRPGME 594
            .|||....         |:.:|.|.|.|. ..|.:..:..|.:|..|: ..|::..........:
  Fly   481 KILAQGPQYSIPKAHLGNEGKYHCHAVNE-LGIGMMATIVLEIHQPPQFLAKLQQHMTRRVADTD 544

  Fly   595 ATIICDSSSSNPPAKLSWWKDGIPIEGINNTSKPGLWGGTVSTLEFRVNVTQEMNGQVYTCQSAN 659
            .|:.| |:...|...:.|.||.:.|....|            ..|.:.|..|.:||.| |.||  
  Fly   545 YTVTC-SAKGKPAPSVKWLKDAVEILPEEN------------LYEVQTNPDQGLNGMV-TVQS-- 593

  Fly   660 EALQRSAHEAVSLDVLYRPKFVPPPSSTAVGVEGESLQVSLQTRANPTPVTYKWTKDGTTIPQDG 724
                                                 |:..:.:|.|                  
  Fly   594 -------------------------------------QLKFRGKARP------------------ 603

  Fly   725 DHRIFADGGSLNFTRLHRDDAGIYSCSASNSQGGATLNITVVVEYGTTIKSVSENIVVNPGEDAM 789
                       |...|...|.|:|:|...|....|..::.:.:|:        |.||::      
  Fly   604 -----------NGNALVPGDRGLYTCLYQNEVNSANSSMQLRIEH--------EPIVLH------ 643

  Fly   790 LSCTVEGKPLTEEHVKWERVGYDMTVKTSTTFANGTSYLHIKDAKREDVGNFRCVADNRVDNPTN 854
                           ::.:|.:|:.                                        
  Fly   644 ---------------QYNKVAFDIR---------------------------------------- 653

  Fly   855 RDILLIVKFAPEIAKTPTLLRAASGTGERGRLPCRAQGSPKPQFIWRQDKKDLPINRTY--KYEV 917
                                       |...:.|:.|..|||:|.|:......|:..:.  .||:
  Fly   654 ---------------------------ETAEVVCKVQAYPKPEFQWQFGNNPSPLTMSSDGHYEI 691

  Fly   918 EERKIDSLTYESTLIVDKVAPADYGAYECVARNELGEAVETVRLEITSQPDPPLSLNILNVTHDT 982
            .....::..|.|.|.::.:..:|||.|.|...|.|......:||:....|:.|.:|....|.|:.
  Fly   692 STTTDNNDIYTSVLKINSLTHSDYGEYTCRVANTLDTIRAPIRLQQKGPPEKPTNLRATEVGHNY 756

  Fly   983 VTLAWTPGFDGGL-KASYRVRYRMA--DREQYKYID--GLPNSH--------------KLTIGGL 1028
            |:|:|.||||||| |..:.|.||..  .||:....|  .|.||:              |:|  .|
  Fly   757 VSLSWDPGFDGGLSKTKFFVSYRRVAMPREEQLIPDCATLANSNSAWVEVDCQRDIPCKVT--AL 819

  Fly  1029 RMNTLYLFSVMSWNELGQSSYLPD-LARAETKEAPPPSHPASSLGGGPPTTSQTPLGGTSGMLLV 1092
            ..:..|.|.|.:.|....|.|..: :...:....|||..           .:..|...|.|   :
  Fly   820 EQHQSYAFKVKALNPKSDSPYSSEIMVTTKVSRIPPPLQ-----------VTYEPNTRTLG---I 870

  Fly  1093 GVGAGIVVVLLNVFVIGCCLHKRNEKRLKRGLELMPAELTEDSSNTPNLVIIGISLAAFGFLLVN 1157
            .|||             .||                           |||.:..|       :||
  Fly   871 DVGA-------------TCL---------------------------NLVAVVES-------MVN 888

  Fly  1158 AS--LVAWFFVHQRRKKVAETT--------NQPA-KTATIE--MYAPSSYNDTVTGETLSSVSE- 1208
            |.  :.||..|         ||        |.|. |...|:  :.|.........|.|:|...: 
  Fly   889 ADSPMAAWEVV---------TTMDNLQLSGNGPTHKEKIIDRIIGARRVGGGRALGHTISEDEDD 944

  Fly  1209 ---KSESYSNEGS----------SQPEYI-DEVRKKAASTYLVEGSDMPPPRYQKDGTLPVIYPN 1259
               .|.:..:|.|          :.||:. |....:....|:.|.:.:..|      ||..|..:
  Fly   945 NGLNSLALEDENSPTVRVKLCLRTNPEHCGDYTDAEIGRPYIAEANALATP------TLIAIIVS 1003

  Fly  1260 NVVNA---------CTLPHPRHNNGSAAIHMTRDDQM-LISKGVYIPSPSPAPPPDGSYYNMNSD 1314
            .||.|         |.....:....:||    :|.:| .:...:.....:.||||   ||..:. 
  Fly  1004 CVVFALFAGLILMFCRCKRNQSKKSAAA----KDYEMDSVRPSIVAAQQNQAPPP---YYPASG- 1060

  Fly  1315 RYLSYPPMEYPAALDFTAQPMPMAHLQPMTVTSLATNGGPTLIGNGSVAAVAGGSGTLRRGILRG 1379
              |....:|:...|..:.:....|........|.....|...:|.|......|..|::..|:..|
  Fly  1061 --LDNKALEHSMDLALSMEDQKTALYATQNGYSYHPGSGVVGVGMGGGVVGVGVGGSVVSGMGGG 1123

  Fly  1380 VVGVPQPDVTHHTSTVGGSPMQMLHDLHPVNLSASTLTTSTTLNGSLPTATATLPRQPHGILKDP 1444
            |.|:....|     .|.|.|          .|||.|:..:..:|              .|.:::.
  Fly  1124 VGGIGGSGV-----GVNGIP----------GLSAHTMPGNEWVN--------------MGYMENN 1159

  Fly  1445 NRNKQQQQQQQQQQQQQQLQHQQQLLNASLVG--VGVPVSAPLGSLQILNLPPASGGLGNNLLMT 1507
            ..|.........|....|::     ::|:.||  .|: |.||:.  |.:...||.|         
  Fly  1160 YSNSNNGGSVNSQDSLWQVK-----MSAAAVGNQQGM-VQAPMN--QYVEQQPAYG--------- 1207

  Fly  1508 TNAFDPTTVGLSSFGAVSQAGGIP 1531
               :||.|.|  .:|||......|
  Fly  1208 ---YDPLTHG--GYGAVDDYAPYP 1226

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snsNP_001036532.1 I-set 73..170 CDD:254352 22/110 (20%)
Ig 76..155 CDD:299845 21/91 (23%)
IG_like 186..279 CDD:214653 25/93 (27%)
Ig 197..279 CDD:299845 24/82 (29%)
IG_like 296..376 CDD:214653 15/79 (19%)
Ig 300..361 CDD:299845 11/60 (18%)
Ig 380..454 CDD:299845 17/77 (22%)
IG_like 490..573 CDD:214653 19/92 (21%)
Ig 501..560 CDD:299845 16/68 (24%)
Ig 584..666 CDD:299845 18/81 (22%)
IG_like 585..666 CDD:214653 18/80 (23%)
I-set 678..767 CDD:254352 11/88 (13%)
IGc2 692..757 CDD:197706 10/64 (16%)
Ig 788..849 CDD:143165 2/60 (3%)
Ig 885..960 CDD:143165 20/76 (26%)
FN3 967..1051 CDD:238020 34/102 (33%)
edNP_001260013.1 Ig 50..147 CDD:299845 23/99 (23%)
I-set 146..249 CDD:254352 30/109 (28%)
Ig 168..249 CDD:299845 24/84 (29%)
IGc2 268..323 CDD:197706 12/63 (19%)
Ig_3 341..406 CDD:290638 18/81 (22%)
Ig_2 437..514 CDD:290606 19/89 (21%)
I-set 526..633 CDD:254352 31/188 (16%)
Ig 546..632 CDD:143165 29/167 (17%)
IG_like 654..736 CDD:214653 22/81 (27%)
Ig 656..734 CDD:143165 20/77 (26%)
FN3 741..848 CDD:238020 34/108 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451329
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3515
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11640
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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