DRSC/TRiP Functional Genomics Resources

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Protein Alignment sns and DIP-kappa

DIOPT Version :9

Sequence 1:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster
Sequence 2:NP_723828.1 Gene:DIP-kappa / 318958 FlyBaseID:FBgn0051814 Length:672 Species:Drosophila melanogaster


Alignment Length:584 Identity:120/584 - (20%)
Similarity:195/584 - (33%) Gaps:155/584 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   678 PKFVPPPSSTAVGVEGESLQVSLQTRANPTPVTYKWTKDGTTIPQDGDHRIFADGGSLNFT---- 738
            |:|..|.::..|.|..::|...:........|.  |.:..|.......|.:.:....::.|    
  Fly    74 PRFAEPIANVTVSVGRDALMACVVENLKGYKVA--WVRVDTQTILSIHHNVISQNSRISLTYNDH 136

  Fly   739 --------RLHRDDAGIYSCSAS-----NSQGGATLNITVVVEYGTTIKSVSENIVVNPGEDAML 790
                    .:...|.|.|.|..:     :.:|...:.:..::..|.|    |.::||..|::..|
  Fly   137 RSWYLHIKEVEETDRGWYMCQVNTDPMRSRKGYLQVVVPPIIVEGLT----SNDMVVREGQNISL 197

  Fly   791 SCTVEGKPLTEEHVKWERV-GYDMTVKTSTTFANGTSYLHIKDAKREDVGNFRCVADNRVDNPTN 854
            .|...|.|  |.:|.|.|. |.:|.:............|||....|..:..:.|||.|.|....:
  Fly   198 VCKARGYP--EPYVMWRREDGEEMLIGGEHVNVVDGELLHITKVSRLHMAAYLCVASNGVPPSIS 260

  Fly   855 RDILLIVKFAPEIAKTPTLLRAASGTGERGRLPCRAQGSPKPQFIWRQDKKDLPINRTY----KY 915
            :.:.|.|:|.|.:: .|..|..|. .|:...|.|..:..|.....|..::.|:.|:.|.    ||
  Fly   261 KRVHLRVQFPPMLS-IPNQLEGAY-LGQDVILECHTEAYPASINYWTTERGDMIISDTSRAGDKY 323

  Fly   916 EVEERKIDSLTYESTLIVDKVAPADYGAYECVARNELGEAVETVRLEITSQPDPPLS----LNIL 976
            |... .:...|....|.:..|.|.|:|.|.|||:|.|||....::|:  ..|.|..:    :::|
  Fly   324 ETTS-TVSGYTKYMKLKIRAVGPNDFGTYRCVAKNSLGETDGNIKLD--EMPTPTTAIISEMSLL 385

  Fly   977 NVTHDTVTLAWTPGFDGGLKASYRVRYRMADREQYKYIDGLPNSHKLTIGGLRMNTLYLFSVMSW 1041
            |.::|.                     :...|.::...:.||:                :.|..|
  Fly   386 NRSYDG---------------------KRRHRNKFDSANALPD----------------YGVEEW 413

  Fly  1042 NELGQSSYLPDLARAETKEAPPPSHPASSLGGGPPTTSQTPLGGTSGM------------LLVGV 1094
            .:..|.:.                      .|.....:|||:....|.            ||..:
  Fly   414 RDGAQGNN----------------------AGNNGDNNQTPVRNPPGAFHNSAGSLAQHNLLAKI 456

  Fly  1095 GAGIVVVLLNVFVIGCCLHKRNEKRLKRGLELMPAELTEDSSNTPNLVIIGISLAAFGFL-LVNA 1158
            ..||......:|           |||...|.|                     .|...|| |...
  Fly   457 MLGIKTQSFGIF-----------KRLSSSLPL---------------------AAGQSFLWLSTL 489

  Fly  1159 SLVAWFFVHQRRKKVAETTNQPAKTATIEMYAPSSYNDTVT--GETLSSVSEKSESYSNEGSSQ 1220
            |||:    ...|.:::...|:|....|:      ..|||..  .||.|....:|.:.:|...:|
  Fly   490 SLVS----APSRWRMSNVENRPNSPETV------VNNDTAAECWETRSHCVSESNNNNNSRITQ 543

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snsNP_001036532.1 I-set 73..170 CDD:254352
Ig 76..155 CDD:299845
IG_like 186..279 CDD:214653
Ig 197..279 CDD:299845
IG_like 296..376 CDD:214653
Ig 300..361 CDD:299845
Ig 380..454 CDD:299845
IG_like 490..573 CDD:214653
Ig 501..560 CDD:299845
Ig 584..666 CDD:299845
IG_like 585..666 CDD:214653
I-set 678..767 CDD:254352 16/105 (15%)
IGc2 692..757 CDD:197706 10/81 (12%)
Ig 788..849 CDD:143165 18/61 (30%)
Ig 885..960 CDD:143165 24/78 (31%)
FN3 967..1051 CDD:238020 11/87 (13%)
DIP-kappaNP_723828.1 Ig 80..172 CDD:299845 13/93 (14%)
IG_like 82..174 CDD:214653 13/93 (14%)
IG_like 184..267 CDD:214653 24/84 (29%)
IGc2 191..255 CDD:197706 19/65 (29%)
IG_like 282..368 CDD:214653 26/87 (30%)
Ig 288..367 CDD:143165 24/79 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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