DRSC/TRiP Functional Genomics Resources

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Protein Alignment sns and Kirrel3

DIOPT Version :9

Sequence 1:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster
Sequence 2:XP_038937320.1 Gene:Kirrel3 / 315546 RGDID:1311382 Length:869 Species:Rattus norvegicus


Alignment Length:1002 Identity:211/1002 - (21%)
Similarity:345/1002 - (34%) Gaps:271/1002 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 SHAQQQKFRTTPHDLQVLEGAEAMMRCEVANVAGAVQWTKDGFALGFSAVIPGFPRYSVLGDRKQ 131
            :..|...|...|.|..|:.|....:.|.:....|.|.|.|||.|||....:..:|:|.|:|:...
  Rat    43 NEGQVYSFSQQPQDQVVVSGQPVTLLCAIPEYDGFVLWIKDGLALGVGRDLSSYPQYLVVGNHLS 107

  Fly   132 GIYNLRISNASINDDADYQCQVGPARLNSAIRAN-AKLTVISPPASIEIKGYSHNSKVEVRENQD 195
            |.::|:|..|.:.|||.|:||.    :.:|||:. |:|||:.||....|.|   ...:.:|....
  Rat   108 GEHHLKILRAELQDDAVYECQA----IQAAIRSRPARLTVLVPPDDPIILG---GPVISLRAGDP 165

  Fly   196 LQLKCIVANAKPAAQIVWYR-GNV----EYKPEKREDTVEESTAKRFTTTSSLKLKPGPDDDYTE 255
            |.|.|...||||||.|:|.| |.|    .|......|      .||.:..|:|.:.||..::...
  Rat   166 LNLTCHADNAKPAASIIWLRKGEVINGATYSKTLLRD------GKRESIVSTLFISPGDVENGQS 224

  Fly   256 YTCQARHKALSPDMPMRATVQLSVLYPPGPPYIEGYSAGETLRRGQTVELMCRSRGGNPPAQLIW 320
            ..|:|.:||:........|:.:.     .||.:......:.:.....|...|.::......|..|
  Rat   225 IVCRATNKAIPGGKETSVTIDIQ-----HPPLVNLSVEPQPVLEDNIVTFHCSAKANPAVTQYRW 284

  Fly   321 YKNGSQIRMA----YRTSGRLSENIYTFTAEAGDNKARFRCEASNVMSQNPLKAEVELSVLFAPT 381
            .|.|..|:.|    |||:..     ||:.:|.      ..||.:|.:....|...|:  |.|.|.
  Rat   285 AKRGHIIKEASGELYRTTVD-----YTYFSEP------VSCEVTNALGSTNLSRTVD--VYFGPR 336

  Fly   382 HVTVMGPTEARVGDIVPLTCTTAPSNPPAEIKWMVGGRQV-----RNATSKTIVSPEGGWTTTSN 441
            ..:........:|.....:|... .||...|.||..|..|     :..|.|::...:.|......
  Rat   337 MTSEPQSLLVDLGSDAVFSCAWI-GNPSLTIVWMKRGSGVVLSNEKTLTLKSVRQEDAGKYVCRA 400

  Fly   442 ITAVVEPNKRSLVVICHGLNMQLTENVVSTHTINVLY------------PPAPPLISGYMEGQII 494
            :...|...:|.:.:..:|..:     :.||.|.:.|:            .|.|..|:...:..::
  Rat   401 VVPRVGAGEREVTLTVNGPPI-----ISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVL 460

  Fly   495 PAGSVQK--LLCVSSGGNPLATLTWYKNDKRINSVIRAADKSVSAEITILANVSDNQAQYRCEAS 557
            .:|:..:  :..|::....::|||       |::::||                |.|..|.|.|.
  Rat   461 ESGTSGRYTVETVNTEEGVISTLT-------ISNIVRA----------------DFQTIYNCTAW 502

  Fly   558 NSATEIPLFQSTTLSVHFAPETVKIRIEPEELRPG--------------------------MEAT 596
            ||      |.|.|       |.::::.:..|::.|                          :.||
  Rat   503 NS------FGSDT-------EIIRLKEQGSEMKSGAGLEAESVPMAVIIGVAVGAGVAFLVLMAT 554

  Fly   597 II--CDSSSSNPPAKLSWWKDGIPIEGINNTSKPGLWG-GTVSTLEFRVNVTQEMNGQVYTCQSA 658
            |:  |.:.|..                 :...:||:.| ||......|:.....:.|.|      
  Rat   555 IVAFCCARSQR-----------------STGGRPGISGRGTEQKARLRLPRRANLKGVV------ 596

  Fly   659 NEALQRSAHEAVSLDVLYRPKFVPPPSSTAVGVEGESLQVSLQTRANPTPVTYKWTKDGTTIPQD 723
                  ||...:.::::::     .|:|   |.|.|                     |.|||.| 
  Rat   597 ------SAKNDIRVEIVHK-----EPAS---GREAE---------------------DHTTIKQ- 625

  Fly   724 GDHRIFADGGSL-----------------NFTRLHRDDAGIYSCSASNSQGGATLNITVVVEYGT 771
                :..|.|..                 .|..|.....|.||.:            |....:.|
  Rat   626 ----LMMDRGEFQQDSVLKQLEVLKEEEKEFQNLKDPTNGYYSVN------------TFKEHHST 674

  Fly   772 TIKSVSENIVVNPGEDAMLSCTVEGKPLTEEHVKWERVGYDMTVKTSTTFANGTSYLHIKDAKRE 836
            ...|:|             ||..:.:|..::.|.   .|...|...||....|..|.:.:.....
  Rat   675 PTISLS-------------SCQPDLRPTGKQRVP---TGMSFTNIYSTLSGQGRLYDYGQSVTAA 723

  Fly   837 DVGNFRCVADNRVDNPTNRDILLIVKFAPE-IAKTPTLLRAASGTGERGRLPCRAQGSPKPQFI- 899
            .......:|...:..|..  :|..:...|. :.:|||.:...||       .||.....:|..: 
  Rat   724 SAAAANKMATCSLTRPAR--LLPPLPTTPSPLPRTPTPVDPCSG-------GCRLTSEDRPSTVV 779

  Fly   900 ---WRQDKKDLPINRTYKYEVEERKIDSL-----------TYESTLIVDKVAPA---DYGAYECV 947
               .|..:.....::.:.|..|:.:...|           ::|: ||..|....   :..|.||:
  Rat   780 GMGQRGGQATFSFSKDWGYFAEDPRTGHLRGGLQAPLLTPSFEA-LIKHKSGSRVENEESAVECI 843

  Fly   948 ARNELGEAVETVRLEITSQPDPPLSLN 974
            .   |...|....|::...|.||:.::
  Rat   844 V---LRAFVSCSSLKVPQTPCPPMGIS 867

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snsNP_001036532.1 I-set 73..170 CDD:254352 34/97 (35%)
Ig 76..155 CDD:299845 28/78 (36%)
IG_like 186..279 CDD:214653 28/97 (29%)
Ig 197..279 CDD:299845 26/86 (30%)
IG_like 296..376 CDD:214653 19/83 (23%)
Ig 300..361 CDD:299845 16/64 (25%)
Ig 380..454 CDD:299845 15/78 (19%)
IG_like 490..573 CDD:214653 18/84 (21%)
Ig 501..560 CDD:299845 13/60 (22%)
Ig 584..666 CDD:299845 15/110 (14%)
IG_like 585..666 CDD:214653 15/109 (14%)
I-set 678..767 CDD:254352 18/105 (17%)
IGc2 692..757 CDD:197706 14/81 (17%)
Ig 788..849 CDD:143165 11/60 (18%)
Ig 885..960 CDD:143165 16/92 (17%)
FN3 967..1051 CDD:238020 3/8 (38%)
Kirrel3XP_038937320.1 IG_like 54..143 CDD:214653 33/92 (36%)
Ig strand A' 56..60 CDD:409353 1/3 (33%)
Ig strand B 64..71 CDD:409353 1/6 (17%)
Ig strand C 78..82 CDD:409353 2/3 (67%)
Ig strand C' 84..87 CDD:409353 1/2 (50%)
Ig strand D 97..101 CDD:409353 2/3 (67%)
Ig strand E 104..116 CDD:409353 3/11 (27%)
Ig strand G 132..143 CDD:409353 5/10 (50%)
IgI_2_KIRREL3-like 149..246 CDD:409416 30/105 (29%)
Ig strand B 166..170 CDD:409416 2/3 (67%)
Ig strand C 180..184 CDD:409416 1/3 (33%)
Ig strand E 210..214 CDD:409416 2/3 (67%)
Ig strand F 224..229 CDD:409416 1/4 (25%)
Ig strand G 239..242 CDD:409416 0/2 (0%)
Ig <267..334 CDD:416386 20/79 (25%)
Ig strand B 267..274 CDD:409353 2/6 (33%)
Ig strand C 279..286 CDD:409353 2/6 (33%)
Ig strand C' 288..291 CDD:409353 1/2 (50%)
Ig strand D 298..302 CDD:409353 2/3 (67%)
Ig strand E 304..310 CDD:409353 2/10 (20%)
Ig strand G 321..334 CDD:409353 3/14 (21%)
Ig 335..416 CDD:416386 15/81 (19%)
Ig strand A' 343..347 CDD:409353 0/3 (0%)
Ig strand B 350..360 CDD:409353 1/10 (10%)
Ig strand C 365..371 CDD:409353 3/5 (60%)
Ig strand E 381..387 CDD:409353 1/5 (20%)
IgI_5_KIRREL3 418..515 CDD:409479 27/137 (20%)
Ig strand B 436..440 CDD:409479 0/3 (0%)
Ig strand C 450..454 CDD:409479 1/3 (33%)
Ig strand E 481..485 CDD:409479 3/10 (30%)
Ig strand F 496..501 CDD:409479 2/4 (50%)
Ig strand G 509..512 CDD:409479 2/9 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D141865at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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