back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment sns and Lsamp

DIOPT Version :9

Sequence 1:	NP_001036532.1	Gene:	sns / 44097	FlyBaseID:	FBgn0024189	Length:	1542	Species:	Drosophila melanogaster
Sequence 2:	XP_038944182.1	Gene:	Lsamp / 29561	RGDID:	71102	Length:	378	Species:	Rattus norvegicus

Alignment Length:	242	Identity:	67/242 - (27%)
Similarity:	102/242 - (42%)	Gaps:	21/242 - (8%)

- Green bases have known domain annotations that are detailed below.

  Fly   712 KWTKDGTTIPQDGDHRIFADGGSLNFTRLHRDDAGIYSCSASNSQGGATLNITVVVEYGTTIKSV 776
            ||:.|    |:....:..|...||...::...|.|.|:||........|..:.::|:....|.::
  Rat    94 KWSLD----PRVELEKRHALEYSLRIQKVDVYDEGSYTCSVQTQHEPKTSQVYLIVQVPPKISNI 154

  Fly   777 SENIVVNPGEDAMLSCTVEGKPLTEEHVKWERVGYDMTVKTSTTFANGTSYLHIKDAKREDVGNF 841
            |.::.||.|.:..|.|...|:|  |..:.|..:     ......|.....||.|....||..|.:
  Rat   155 SSDVTVNEGSNVTLVCMANGRP--EPVITWRHL-----TPLGREFEGEEEYLEILGITREQSGKY 212

  Fly   842 RCVADNRVDNPTNRDILLIVKFAPEIAKTPTLLRAASGTGERGRLPCRAQGSPKPQFIWRQDKKD 906
            .|.|.|.|.:...:.:.:.|.:.|.|.::.:   ..:.||.:..|.|.|...|.|.|.|.:|  |
  Rat   213 ECKAANEVSSADVKQVKVTVNYPPTITESKS---NEATTGRQASLKCEASAVPAPDFEWYRD--D 272

  Fly   907 LPINRTYKYEVEERKIDSLTYESTLIVDKVAPADYGAYECVARNELG 953
            ..||.....|::     |...:|:|.|..|....||.|.|||.|:||
  Rat   273 TRINSANGLEIK-----STEGQSSLTVTNVTEEHYGNYTCVAANKLG 314

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.