DRSC/TRiP Functional Genomics Resources

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Protein Alignment sns and Il1r1

DIOPT Version :9

Sequence 1:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster
Sequence 2:NP_037255.3 Gene:Il1r1 / 25663 RGDID:2892 Length:590 Species:Rattus norvegicus


Alignment Length:650 Identity:115/650 - (17%)
Similarity:204/650 - (31%) Gaps:233/650 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   438 TTSNITAVVEPNKRSLVVICHGLNM------QLTE---NVVSTHTINVLYPPAPPLISGYMEGQI 493
            |:|..::::|..|..|..||..:.:      :.||   .|:|..::|.:...:.||....|.|  
  Rat     7 TSSAKSSILENMKVLLGFICLIVPLLSLETDKCTEYPNEVISFSSVNEIDIRSCPLTPNEMHG-- 69

  Fly   494 IPAGSVQKLLCVSSGGNPLATLTWYKNDKRINSVIRAADK-----SVSAEITILANVSDNQAQYR 553
                               .|:.|||||.:...   :|||     ..:..:..:....::...|.
  Rat    70 -------------------GTIIWYKNDSKTPI---SADKDSRIHQQNEHLWFVPAKMEDSGYYY 112

  Fly   554 CEASNSA----TEIPLFQSTTLSVHFAPETVKIRIEP-----------EELRPGMEATIICD--- 600
            |...||.    |:|      |:||        :..:|           :.|....:.:::|.   
  Rat   113 CIMRNSTYCLKTKI------TMSV--------LENDPGLCYNTQASFIQRLHVAGDGSLVCPYLD 163

  Fly   601 --SSSSNPPAKLSWWKD--GIPIEGINNTSKPGLWGGTVSTLEFRVNVTQEMNGQVYTCQSA--N 659
              ...:|...|:.|:|:  .:|::       .|.:.|..:.| ..:||.:|..|. |||:::  .
  Rat   164 FFKDENNELPKVQWYKNCKPLPLD-------DGNFFGFKNKL-MVMNVAEEHRGN-YTCRTSYTY 219

  Fly   660 EALQRSAHEAVSLDVL-----YRPKFVPPPSSTAVGVEGESLQVSLQTRANPTPVTYKWTKDGTT 719
            :..|......::...:     .||..:.|.:.|.....|.::|:........|.:.| |..:|:.
  Rat   220 QGKQYPVTRVITFITIDDSKRDRPVIMSPRNETMEADPGSTIQLICNVTGQFTDLVY-WKWNGSE 283

  Fly   720 IPQDGDHRIFADGGSLNFTRLHRDDAGIYSCSASNSQGGATLNITVVVEY-----------GTTI 773
            |..| |..:..|...|......|....|           .|||::.|...           .|.|
  Rat   284 IEWD-DPILAEDYQFLEHPSAKRKYTLI-----------TTLNVSEVKSQFYRYPFICFVKNTHI 336

  Fly   774 KSVSENIVVNPGED--------------AMLSCTVEGKPLTEEHVKWERVG-------------- 810
            ...:...:|.|..|              ..:.|....|....:.|.|.|..              
  Rat   337 LETAHVRLVYPVPDFKNYLIGGFAIFTATAVFCACIYKVFKVDIVLWYRDSCSDFLPPKASDGKT 401

  Fly   811 YDMTVKTSTTFANGT-SYL---------------------------------------HIKDAKR 835
            ||..|....|:..|: :||                                       ::|.::|
  Rat   402 YDAYVLYPKTYGEGSFAYLDTFVFKLLPEVLEGQFGYKLFICGRDDYVGEDTIEVTNENVKRSRR 466

  Fly   836 ------EDVGNFRCVADNRVDNPTNRD---------ILLIVKFAPEIAKTPTLLRAASGTGERGR 885
                  .|:|:|.|:..:..:.....|         |||.::...:..|.|..:           
  Rat   467 LIIILVRDMGSFSCLGQSSEEQIAIYDALIREGIKIILLELEKIQDYEKMPESI----------- 520

  Fly   886 LPCRAQGSPKPQFI--------WRQDKKDLPIN------RTYKYEVEERKIDSLTYESTLIVDKV 936
                       |||        |..|.|:.|.:      :..:|::..::...|:....|.:|.|
  Rat   521 -----------QFIKQKHGAICWSGDFKERPQSAKTRFWKNLRYQMPAQRRSPLSKHHLLTLDPV 574

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snsNP_001036532.1 I-set 73..170 CDD:254352
Ig 76..155 CDD:299845
IG_like 186..279 CDD:214653
Ig 197..279 CDD:299845
IG_like 296..376 CDD:214653
Ig 300..361 CDD:299845
Ig 380..454 CDD:299845 4/15 (27%)
IG_like 490..573 CDD:214653 17/91 (19%)
Ig 501..560 CDD:299845 12/63 (19%)
Ig 584..666 CDD:299845 19/101 (19%)
IG_like 585..666 CDD:214653 19/100 (19%)
I-set 678..767 CDD:254352 19/88 (22%)
IGc2 692..757 CDD:197706 13/64 (20%)
Ig 788..849 CDD:143165 18/120 (15%)
Ig 885..960 CDD:143165 11/65 (17%)
FN3 967..1051 CDD:238020
Il1r1NP_037255.3 Ig 47..130 CDD:299845 22/112 (20%)
Ig2_IL1R_like 144..236 CDD:143234 18/100 (18%)
Ig_3 242..333 CDD:290638 21/103 (20%)
IG_like 251..344 CDD:214653 20/105 (19%)
TIR 401..556 CDD:214587 27/176 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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