DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sns and ver-4

DIOPT Version :9

Sequence 1:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster
Sequence 2:NP_509835.2 Gene:ver-4 / 186632 WormBaseID:WBGene00006897 Length:1216 Species:Caenorhabditis elegans


Alignment Length:1024 Identity:204/1024 - (19%)
Similarity:371/1024 - (36%) Gaps:270/1024 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   145 DDADYQCQVGPARLNSAI-----RANAKLT----VISPPASI--EIKGYSHNSKVEVRENQDLQL 198
            |..:.:..|...:||||:     |...|||    .:.|.:::  |.| |:::|      ||||..
 Worm   157 DTKNVELYVNQVKLNSALQGYDQRYGFKLTKNMYTMKPNSTVFFECK-YTNDS------NQDLDY 214

  Fly   199 KCIVANAKPAAQIV------WYRGNVEYKPEKREDTVEESTAKRFTTTSSLKLKPGPDDDYTEYT 257
              .::|:.|.|.::      |         ||..|.                  |...::|: .|
 Worm   215 --YISNSDPDATLIDQYFFYW---------EKSNDV------------------PYVGNNYS-IT 249

  Fly   258 CQARHKALSPDMPMRATVQLSVLYPPGPPYIEGY---SAGETLRRGQTVELMCRSRGGNPPAQLI 319
            |...:  :..|.......|..||..|......||   ||.|..:|...:      |.|:|.:|.|
 Worm   250 CHLVY--IGSDSLRPLNHQEIVLECPQNQCDGGYNNQSAHEIEKRSSGL------RFGDPSSQDI 306

  Fly   320 WYKNGSQIR----MAYRTSGRLSENIYTFTAEAGDNKARFRCEASNVMSQNPLKAEVELSVLFAP 380
            ..|| :.:|    ..|......:.|....|:|   :...:||...| .|:..:..:.:|:.....
 Worm   307 VEKN-TMLRYDRLSVYDRKTSRTVNFQNLTSE---DSGIYRCTWRN-RSKTNIVLDYDLNFNQKG 366

  Fly   381 THVTVMGPTEARV------GDIVPLTCTTAPSNPP-AEIKW-------MVGGRQV---RNATSKT 428
            |.:.::..::.|:      ..::.:.....|.|.. ...||       :.||:||   ||...:.
 Worm   367 TQIKIIETSKQRLKMRKNESTLLFVKFAVFPINKKNYTAKWSRLYNSTVEGGQQVETIRNGFFRQ 431

  Fly   429 IVSPEGGWTTTSNITAVVEP-NKRSLVVICHGL------NMQLTENV-----VSTHTINVLYPPA 481
            |.      |.||.....:|. |.:|..:...|:      ||.:.:.|     |.....|......
 Worm   432 IT------TKTSGRNVFLETLNLKSPKIEMSGIYVLSISNMDIVQQVKWIIEVENDEPNAQLTIR 490

  Fly   482 PPLISGYMEGQIIPAGSVQKLLCVSSGGNPLATLTWYKNDKRINSVIRAADKSVSAEIT------ 540
            .||.........:|..:...:.|::...:|...:..|:.|:  |...|...|:...:|.      
 Worm   491 DPLTLNISNQLFLPLNTNLSIFCLAVSSSPTDVIFEYRTDE--NEWFRGFYKNKLRKIDDTFEKG 553

  Fly   541 -----ILANVSDNQAQYRC----EASNSATEIPLFQSTTLSVHFAPETVK-IRIEPEE-LRPGME 594
                 :||..:|    ::|    :...|...|.:..:...:.|...::|. .:.||.: :..|..
 Worm   554 FIYNFVLAKRTD----FKCINVKKKKTSTKFITVTSNANKTFHEIEKSVNATKTEPSDIIFEGDN 614

  Fly   595 ATIICDSSSSNPPAKLS---WWKDGIPIEGINNTSKPGLWGGTVSTLEFRV-----NVTQEMNGQ 651
            ..:.|    ..|...:.   :||...| :.:..|:.|.:  ..|.....||     |:|.:..| 
 Worm   615 VRLTC----VVPYGAVEFDVFWKFENP-KMLKYTTFPAM--HPVKDRYKRVILNVRNITIDFTG- 671

  Fly   652 VYTCQSANEALQRSAHEAVSLDVLYRPKFVPPPSSTAVGV-EGESLQVSLQTRANPTPVTYKWTK 715
            .|.|...|:..:.....::|::.:..|..:...|.:.:.. .|:...::.:....||| .|.|.|
 Worm   672 TYYCIVKNKEFEHRFETSISVEKVSPPFLLNNNSRSIISASNGQMFDINCKVNGVPTP-DYTWFK 735

  Fly   716 DGTTIPQDGDHRIFADGGSLNFTRLHRDDAGIYSCSASNSQGGATLNITVVVEYGTTIKS----- 775
            ||  .|......|   |.:|:.::..:.|.||:.|||:| :.|.|::...|...|.:..|     
 Worm   736 DG--YPYTKGKVI---GNALHVSKAEKRDNGIFWCSATN-RAGTTIDYIEVKVAGASSSSFFWLF 794

  Fly   776 ------VSENIVVN------------PGEDAMLSCTVEGKPLTEEHVKW------------ERVG 810
                  |...|||:            |.|.::.:.    |..|:|:.|:            ||:.
 Worm   795 ITFFAFVVVGIVVSLLWKLFGQKDLKPSELSLNNL----KRATDEYQKYTVSEKINNLPVEERID 855

  Fly   811 Y---------DM-TVKTSTTFANG------TSYLHIKDAKREDVGNFRCVADNRVDNPTNRDILL 859
            |         |: .::...|..:|      ..||::..:|.....:...||.....:.:|.::..
 Worm   856 YLTYNEDYEIDLENLEILETLGSGQFGIVKKGYLNMASSKNFGFESRLSVAIKSSTDSSNMELQK 920

  Fly   860 I----VKFAPEIAKTP---TLLRAASGTGERGRLPCRAQ---GSPKPQFIWRQDKKDLPINR--- 911
            :    :|....|.|.|   :|:.|.:...|.|.|....:   |....:|:  ::::|:..|.   
 Worm   921 MFFEELKLMCAIPKHPNVLSLVGAVTKNMEIGELFIVTELIDGGNLREFL--RERRDVFANELVE 983

  Fly   912 -------TYKYEVEERKIDSLTYESTLIVDKVAPADYGAYECVARNELGEAVETVRLEITSQPDP 969
                   ..:..|.:|:::    :..|::|:        :..:..::|    .::.|:|.:..|.
 Worm   984 KGYIFLTNVRENVPKREVE----KEQLLIDE--------FNSLCTSDL----LSIGLQIANGMDW 1032

  Fly   970 PLSL----------NILNVTHDTVTLAWTPGFDGGL------KASYRVR 1002
            ..::          |:|......:.:|     |.||      ||.||||
 Worm  1033 LANIPCVHRDLACRNVLISKTKIIRIA-----DFGLAKKHTDKAYYRVR 1076

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snsNP_001036532.1 I-set 73..170 CDD:254352 10/33 (30%)
Ig 76..155 CDD:299845 2/9 (22%)
IG_like 186..279 CDD:214653 18/98 (18%)
Ig 197..279 CDD:299845 13/87 (15%)
IG_like 296..376 CDD:214653 18/83 (22%)
Ig 300..361 CDD:299845 14/64 (22%)
Ig 380..454 CDD:299845 19/91 (21%)
IG_like 490..573 CDD:214653 15/97 (15%)
Ig 501..560 CDD:299845 12/73 (16%)
Ig 584..666 CDD:299845 19/90 (21%)
IG_like 585..666 CDD:214653 19/89 (21%)
I-set 678..767 CDD:254352 24/89 (27%)
IGc2 692..757 CDD:197706 20/64 (31%)
Ig 788..849 CDD:143165 15/88 (17%)
Ig 885..960 CDD:143165 10/87 (11%)
FN3 967..1051 CDD:238020 13/52 (25%)
ver-4NP_509835.2 ig 609..679 CDD:278476 16/77 (21%)
IG_like 611..692 CDD:214653 17/88 (19%)
IG_like 709..782 CDD:214653 23/79 (29%)
IGc2 714..772 CDD:197706 20/64 (31%)
STYKc 870..1175 CDD:214568 41/230 (18%)
PTKc 874..1176 CDD:270623 41/226 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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