DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sns and igcm-2

DIOPT Version :9

Sequence 1:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster
Sequence 2:NP_001362087.1 Gene:igcm-2 / 180913 WormBaseID:WBGene00020130 Length:802 Species:Caenorhabditis elegans


Alignment Length:760 Identity:174/760 - (22%)
Similarity:275/760 - (36%) Gaps:186/760 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   487 GYMEGQIIPAGSVQKLLC-VSSGGNPLATLTWYKNDKRINSVIRAADKSVSAE------------ 538
            |.|:.....||:...|.| :|.......:|.|.|:.:.|.|........|:..            
 Worm    18 GEMKAYWGKAGAPITLPCSISLFNEESFSLDWRKDGQLILSAFGQEQGHVTPTLQGRLARDGFLG 82

  Fly   539 ITILANVSDNQAQYRCEASNSATEIPLFQSTTLSVHFAPETVKIRIEPEE-----LRPGMEATII 598
            |||.:....:...|:|..:..:.: |......||.........:.|.|.:     .:.|.:....
 Worm    83 ITIHSVTDGDAGVYQCIVTKFSKQ-PTRPEKGLSAKLVVNVPPVIISPSKNAIIHKKVGADLIFE 146

  Fly   599 CDSSSSNPPAKLSWWKDGIPIEGINNTSKPGLWGGTVSTLEFRVNVTQEMNGQVYTCQSANEALQ 663
            |.:..: |..:::|.::    |.|.:|| |.|   |:|.||       |.:..:|||.:.|    
 Worm   147 CKAEGA-PSPEITWSRN----EQIISTS-PVL---TLSNLE-------EGDKGLYTCLAVN---- 191

  Fly   664 RSAHEAVSLDVLYRPKFV---PPPSSTAVGVEGESLQVSLQTRANPTPVTYKWTKDGTTIPQDG- 724
            ...:...|:||.:....:   .|.:.|.  :||.::.......|..|.::|.|..:...|.... 
 Worm   192 IEGNSTSSIDVRFTKATILDLIPLNKTV--IEGSNVFWHCHANAQATAISYSWLFEKKPIKTTSL 254

  Fly   725 DHRIFADGGSLNFTRLHRDDAGIYSCSASNSQGGATLNITVV-VEYGTTIKSVSENI-VVNPGED 787
            ..|.....|.|:...:.:.|:|.|:|.|.||.|..|.:...: |.|.....|..:.: .|..|.:
 Worm   255 GLRSNIRSGDLSLQDVRKSDSGWYTCEAKNSAGETTSSTAYLHVFYPPEPLSSHQPVQTVASGRN 319

  Fly   788 AMLSCTVEGKPLTEEHVKWERVGYDMTVKTSTTFANGTSYLHIKDAKREDVGNFRCVADNRVDNP 852
            ..:||.|...| |.....|.:.|:.:..:.|       |::.|..||..|.|.:.|.|||.....
 Worm   320 TTVSCDVIANP-TPTSYTWSKNGHYLPTQAS-------SHIIISYAKPGDGGIYGCQADNIAGKG 376

  Fly   853 TNRDILLIVKFAPEIAKTPTLLRAASGTGERGRLPCRAQGSPKPQFIWRQDKKDLPINRTYKYEV 917
            :..:..|||...|.....|. .......|::..:||:..|.|.|...|.:|||  .||       
 Worm   377 SIVETHLIVAEPPVFTVAPP-SEIKVRLGDQVSIPCQGFGDPMPIVYWIRDKK--RIN------- 431

  Fly   918 EERKIDSLTYESTLIVDKVAPADYGAYECVARNELGEAVETVR------LEITSQPDPPLSLNIL 976
                      :|||...||...|:||||||..|    :|||:.      :||| :|....|:...
 Worm   432 ----------QSTLTFKKVEHLDHGAYECVVAN----SVETISTRVMLLVEIT-KPQMASSIKFT 481

  Fly   977 NVTHDTVTLAWTPGFDGGLKASYRVRYRMADREQYKYIDGLPN-----------SHKLTI----- 1025
            .:...::.::||||::||...::.|..:.....|:..|....|           |::::|     
 Worm   482 CLNSSSMRISWTPGYNGGFDQTFAVHAQNDVTLQWTSIKTSLNETILDHLEPFVSYRVSIESVNA 546

  Fly  1026 -GGLRMNTLYLFSVMS-----------WNEL------GQSSYLPDLARAETKEAP---------- 1062
             |.....|....|..|           :|||      |.|||     |.|::..|          
 Worm   547 KGSTNSTTYNRRSCTSLHAPDKLYFCGYNELCWTAAEGASSY-----RIESRTEPSKNFQPLAEV 606

  Fly  1063 ----------------------------PPSHPASSLGGGPPTTSQTPLGGTSGMLLVGVGAGIV 1099
                                        |||.|:::|..|.......|:     .:|..|..   
 Worm   607 LETYYRLGKDVDETKQTIFRVRSTRPSYPPSEPSNALRYGIADNVDLPI-----FMLAAVFG--- 663

  Fly  1100 VVLLNVFVIGC----CLHKRNEKRLKRGLELMPAELTEDSSNTPN 1140
              ||..|..|.    |.|.:|:|..:|         ...|::||:
 Worm   664 --LLFCFACGLFAWRCFHNKNKKSKRR---------KSRSNSTPS 697

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snsNP_001036532.1 I-set 73..170 CDD:254352
Ig 76..155 CDD:299845
IG_like 186..279 CDD:214653
Ig 197..279 CDD:299845
IG_like 296..376 CDD:214653
Ig 300..361 CDD:299845
Ig 380..454 CDD:299845
IG_like 490..573 CDD:214653 18/95 (19%)
Ig 501..560 CDD:299845 14/71 (20%)
Ig 584..666 CDD:299845 21/86 (24%)
IG_like 585..666 CDD:214653 20/85 (24%)
I-set 678..767 CDD:254352 21/93 (23%)
IGc2 692..757 CDD:197706 17/65 (26%)
Ig 788..849 CDD:143165 18/60 (30%)
Ig 885..960 CDD:143165 27/74 (36%)
FN3 967..1051 CDD:238020 25/117 (21%)
igcm-2NP_001362087.1 IG_like 23..101 CDD:214653 16/77 (21%)
Ig 124..200 CDD:386229 21/95 (22%)
IG_like 214..298 CDD:214653 21/85 (25%)
Ig_3 309..371 CDD:372822 18/69 (26%)
Ig 389..467 CDD:386229 30/101 (30%)
FN3 476..548 CDD:238020 13/71 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D141865at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11640
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.020

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