DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sns and sma-10

DIOPT Version :9

Sequence 1:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster
Sequence 2:NP_499896.1 Gene:sma-10 / 176849 WormBaseID:WBGene00020649 Length:881 Species:Caenorhabditis elegans


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snsNP_001036532.1 I-set 73..170 CDD:254352
Ig 76..155 CDD:299845
IG_like 186..279 CDD:214653
Ig 197..279 CDD:299845
IG_like 296..376 CDD:214653
Ig 300..361 CDD:299845
Ig 380..454 CDD:299845
IG_like 490..573 CDD:214653
Ig 501..560 CDD:299845
Ig 584..666 CDD:299845
IG_like 585..666 CDD:214653
I-set 678..767 CDD:254352
IGc2 692..757 CDD:197706
Ig 788..849 CDD:143165
Ig 885..960 CDD:143165
FN3 967..1051 CDD:238020
sma-10NP_499896.1 LRRNT 29..54 CDD:214470
leucine-rich repeat 55..77 CDD:275380
LRR_8 78..135 CDD:290566
LRR_4 78..116 CDD:289563
leucine-rich repeat 78..101 CDD:275380
LRR_RI 100..303 CDD:238064
leucine-rich repeat 102..124 CDD:275380
leucine-rich repeat 125..148 CDD:275380
leucine-rich repeat 149..172 CDD:275380
LRR_8 172..231 CDD:290566
leucine-rich repeat 173..196 CDD:275380
leucine-rich repeat 197..220 CDD:275380
leucine-rich repeat 221..244 CDD:275380
LRR_8 243..303 CDD:290566
leucine-rich repeat 245..268 CDD:275380
LRR_RI 269..453 CDD:238064
leucine-rich repeat 269..292 CDD:275380
leucine-rich repeat 293..316 CDD:275380
LRR_8 315..373 CDD:290566
leucine-rich repeat 317..340 CDD:275380
leucine-rich repeat 341..364 CDD:275380
leucine-rich repeat 365..392 CDD:275380
LRR_8 393..450 CDD:290566
leucine-rich repeat 393..416 CDD:275380
leucine-rich repeat 417..438 CDD:275380
I-set 506..612 CDD:254352
Ig 522..606 CDD:143165
I-set 616..705 CDD:254352
Ig 633..705 CDD:299845
Ig 716..786 CDD:299845
IG 719..788 CDD:214652
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.