DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sns and Kirrel

DIOPT Version :9

Sequence 1:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster
Sequence 2:XP_011238330.1 Gene:Kirrel / 170643 MGIID:1891396 Length:805 Species:Mus musculus


Alignment Length:584 Identity:168/584 - (28%)
Similarity:248/584 - (42%) Gaps:108/584 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 WIKHLQLLRLLAVIVLASAPVPSHAQQQKFRTTPHDLQVLEGAEAMMRCEVANVAGAVQWTKDGF 109
            |..||.:..|:.|.:..:.|    ..|.:|...|.|..|:.|..|::.|.:.|.:|.|||||||.
Mouse    30 WAPHLVVAYLIFVTLALALP----GTQTRFSQEPADQTVVAGQRAVLPCVLLNYSGIVQWTKDGL 90

  Fly   110 ALGFSAVIPGFPRYSVLGDRKQGIYNLRISNASINDDADYQCQVGPARLNSAIRANAKLTVISPP 174
            |||....:..:|||.|:|....|.|||.|::|.::|||.|:||...|.|.|   ..|||||:.||
Mouse    91 ALGMGQGLKAWPRYRVVGSADAGQYNLEITDAELSDDASYECQATEAALRS---RRAKLTVLIPP 152

  Fly   175 ASIEIKGYSHNSKVEVRENQDLQLKCIVANAKPAAQIVWYRGNVEYKPEKREDTVEES----TAK 235
            ....|.|   ...:.::......|.|...||||||.|:|:|...:     :|..|..:    ..|
Mouse   153 EETRIDG---GPVILLQAGTPYNLTCRAFNAKPAATIIWFRDGTQ-----QEGAVTSTELLKDGK 209

  Fly   236 RFTTTSSLKLKPGPDDDYTEYTCQARHKALSPDMPMRATVQLSVLYPPGPPY-IEGYSAGETLRR 299
            |.||.|.|.::|...|....:||::.::|: |: ....:::|.|.:||.... ||    .:|:..
Mouse   210 RETTISQLLIEPTDLDIGRVFTCRSMNEAI-PN-GKETSIELDVHHPPTVTLSIE----PQTVLE 268

  Fly   300 GQTVELMCRSRGGNPPAQLI---WYKNGSQIRMAYRTSGRLSENI-YTFTAEAGDNKARFRCEAS 360
            |:.|...|::. .||  :::   |.|.|..|..|:.:  |...|: |:|..|.      ..||..
Mouse   269 GERVIFTCQAT-ANP--EILGYRWAKGGFLIEDAHES--RYETNVDYSFFTEP------VSCEVY 322

  Fly   361 NVMSQNPLKAEVELSVLFAPTHVTVMGPTEARVGDIVPLTCTTAPSNPPAEIKWMVGGRQVRNAT 425
            |.:....:...|  :|.|||..|....||...:|..|.|||... .|||..:.|.   ::..|..
Mouse   323 NKVGSTNVSTLV--NVHFAPRIVVYPKPTTTDIGSDVTLTCVWV-GNPPLTLTWT---KKDSNMG 381

  Fly   426 SKTIVSPEGGWTTTSNITAVVEPNKRSLVVICHGLNMQLTENVVSTHTINV-------------L 477
            .:...||     ..:|::|.|..|...|::      ..:|:....|:|...             |
Mouse   382 PRLPGSP-----PEANLSAQVLSNSNQLLL------KSVTQADAGTYTCRAIVPRIGVAEREVPL 435

  Fly   478 YPPAPPLISGYMEGQIIPAGSVQKLLCVSSGGNPLATLTW-YKND------------KRINSVIR 529
            |...||:||.... |....|...|:.|......|...:.| :|.:            :|.||   
Mouse   436 YVNGPPIISSEAV-QFAVRGDGGKVECFIGSTPPPDRIAWAWKENFLEVGTLERYTVERTNS--- 496

  Fly   530 AADKSVSAEITILANV--SDNQAQYRCEASNSATEIPLFQSTTLSVHFAPETVKIRIEPEELRP 591
              ...|.:.:|| .||  :|.|..|.|.|.||               |.|.|..|::|..|:.|
Mouse   497 --GSGVLSTLTI-NNVMEADFQTHYNCTAWNS---------------FGPGTAIIQLEEREVLP 542

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snsNP_001036532.1 I-set 73..170 CDD:254352 42/96 (44%)
Ig 76..155 CDD:299845 35/78 (45%)
IG_like 186..279 CDD:214653 26/96 (27%)
Ig 197..279 CDD:299845 26/85 (31%)
IG_like 296..376 CDD:214653 20/83 (24%)
Ig 300..361 CDD:299845 17/64 (27%)
Ig 380..454 CDD:299845 20/73 (27%)
IG_like 490..573 CDD:214653 22/97 (23%)
Ig 501..560 CDD:299845 19/73 (26%)
Ig 584..666 CDD:299845 3/8 (38%)
IG_like 585..666 CDD:214653 3/7 (43%)
I-set 678..767 CDD:254352
IGc2 692..757 CDD:197706
Ig 788..849 CDD:143165
Ig 885..960 CDD:143165
FN3 967..1051 CDD:238020
KirrelXP_011238330.1 Ig 54..148 CDD:386229 42/96 (44%)
Ig2_KIRREL3-like 170..251 CDD:143236 26/87 (30%)
Ig 255..336 CDD:386229 23/97 (24%)
Ig_3 340..421 CDD:372822 24/95 (25%)
Ig5_KIRREL3 439..536 CDD:143306 30/118 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.