DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sns and HHLA2

DIOPT Version :9

Sequence 1:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster
Sequence 2:XP_011510664.1 Gene:HHLA2 / 11148 HGNCID:4905 Length:425 Species:Homo sapiens


Alignment Length:443 Identity:93/443 - (20%)
Similarity:147/443 - (33%) Gaps:139/443 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   751 SASNSQGGATLNITVVVEYGTTIKSVSENIVVNP-GEDAMLSCTVEGKPLTEEHVKWE---RV-- 809
            |.|.|||...|...:.|       .::|.||:.. .||.:|..:.|.......|.|::   :|  
Human    16 SLSGSQGIFPLAFFIYV-------PMNEQIVIGRLDEDIILPSSFERGSEVVIHWKYQDSYKVHS 73

  Fly   810 ---GYDMTVKTSTTFANGTS--YLHIKDAKRE---------DVGNFRCVADNRVDNPTNRDILLI 860
               |.|........:||.||  |..|::....         |.|.:.|.....:...||:.:|.:
Human    74 YYKGSDHLESQDPRYANRTSLFYNEIQNGNASLFFRRVSLLDEGIYTCYVGTAIQVITNKVVLKV 138

  Fly   861 VKFAPEIAKTPTLLRAASGTGERGRLPCRAQG-SPKPQFIWRQDKKDLPINRTYKYEVEER-KID 923
            ..|.     ||.:......|  ...|.|.... .|:|...|:.|  :.||:..   .:||. .:|
Human   139 GVFL-----TPVMKYEKRNT--NSFLICSVLSVYPRPIITWKMD--NTPISEN---NMEETGSLD 191

  Fly   924 SLTYESTLIVDKVAPADYGAYECVARNELGEAVETVRLEITSQPDPPLSLNILNVTHDTVTLAWT 988
            |.:..|.|.:    .....:|||...|.|.:...|.|..:..      .|:.:...|  |:|:..
Human   192 SFSINSPLNI----TGSNSSYECTIENSLLKQTWTGRWTMKD------GLHKMQSEH--VSLSCQ 244

  Fly   989 PGFDGGLKASYRVRYRMADREQYKYIDGLPN-SHKLTIGGLRMNTLYLFSVM------------- 1039
            |..|                    |..  || ..|:|...::..|   |||:             
Human   245 PVND--------------------YFS--PNQDFKVTWSRMKSGT---FSVLAYYLSSSQNTIIN 284

  Fly  1040 ----SWNE--LGQSSY---LPDLARAETKE------------------APPPSHPASSLGGGPPT 1077
                |||:  :.||.:   |.||..:::.|                  ...||...:|...|   
Human   285 ESRFSWNKELINQSDFSMNLMDLNLSDSGEYLCNISSDEYTLLTIHTVHVEPSQETASHNKG--- 346

  Fly  1078 TSQTPLGGTSGMLLVGVGAGIVVVLLNVFVIGCCLHKRNEKRLKRGLELMPAE 1130
                        |.:.|.:.|:...|.::.:.||..:...:|.:.     ||:
Human   347 ------------LWILVPSAILAAFLLIWSVKCCRAQLEARRSRH-----PAD 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snsNP_001036532.1 I-set 73..170 CDD:254352
Ig 76..155 CDD:299845
IG_like 186..279 CDD:214653
Ig 197..279 CDD:299845
IG_like 296..376 CDD:214653
Ig 300..361 CDD:299845
Ig 380..454 CDD:299845
IG_like 490..573 CDD:214653
Ig 501..560 CDD:299845
Ig 584..666 CDD:299845
IG_like 585..666 CDD:214653
I-set 678..767 CDD:254352 6/15 (40%)
IGc2 692..757 CDD:197706 3/5 (60%)
Ig 788..849 CDD:143165 16/79 (20%)
Ig 885..960 CDD:143165 20/76 (26%)
FN3 967..1051 CDD:238020 20/106 (19%)
HHLA2XP_011510664.1 Ig 47..125 CDD:325142 16/77 (21%)
Ig 137..215 CDD:325142 21/93 (23%)
V-set 231..330 CDD:311561 24/125 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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