DRSC/TRiP Functional Genomics Resources

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Protein Alignment sns and LOC110439986

DIOPT Version :9

Sequence 1:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster
Sequence 2:XP_021333824.1 Gene:LOC110439986 / 110439986 -ID:- Length:358 Species:Danio rerio


Alignment Length:402 Identity:101/402 - (25%)
Similarity:176/402 - (43%) Gaps:62/402 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   466 ENVVSTHTINVLYPPAPPLISGYMEGQIIPAGSVQKLLCVSSGGNPLATLTWYKNDKRINSVIRA 530
            :.|:|.| ::....|..|:|| .....:|..|....|.|.|:...|....:|:|.:..:.|    
Zfish     6 DRVLSLH-VSPADAPDTPVIS-INRSAVIKEGDSVTLNCSSNANPPALNFSWFKGETFVGS---- 64

  Fly   531 ADKSVSAEITILANVSDNQAQYRCEASNSATEIPLFQSTTLSVHFAPETVKIRIEPEE-LRPGME 594
                 |....|....||:..:|:|:|.|...| ......||.|.:.|..:.:.:.... :..|..
Zfish    65 -----SRIFNISKISSDDNKKYKCKAKNDLGE-KYSDPVTLDVQYPPRNISVSMNRSAVIMSGDS 123

  Fly   595 ATIICDSSSSNPPAKLSWWKDGIPIEG--INNTSKPGLWGGTVSTLEFRVNVTQEMNGQVYTCQS 657
            .|:.| ||.|||||::||:|....:..  |.|.||                ::.:.:|: |.|::
Zfish   124 VTLSC-SSDSNPPAEISWYKGETSVGSGRIFNISK----------------ISSDDSGE-YKCRA 170

  Fly   658 ANEALQRSAHEAVSLDVLYRPKFVPPPSSTAVGVEGESLQVSLQTRANPTPVTYKWTKDGTTIPQ 722
            .|:..::.: :.|:|||.|.|......:.:||.:||:|:.::..:.:|| |..:.|.|...::  
Zfish   171 RNDHGEKYS-DPVTLDVQYAPDTPVISNRSAVIMEGDSVTLNCSSNSNP-PANFSWFKGNKSL-- 231

  Fly   723 DGDHRIFADGGSLNFTRLHRDDAGIYSCSASNSQGGATLN-ITVVVEYGTTIKSVSEN--IVVNP 784
             ...|||      :.:::..||:|.|.|.|.|..|....: :|:.|:|.....|||.|  .|:..
Zfish   232 -NSGRIF------SISKISSDDSGEYKCRARNVHGEKYSDPVTLDVQYPPRNISVSMNRSAVIMS 289

  Fly   785 GEDAMLSCTVEGKPLTEEHVKWERVGYDMTVKTSTTFANGTSYLHIKDAKREDVGNFRC----VA 845
            |:...|||:.:..|..|  :.|        .|..|:..:|..: :|.....:|.|.::|    :.
Zfish   290 GDSVTLSCSSDSNPPAE--INW--------FKGETSVRSGRIF-NISKISSDDSGEYKCRYKNIH 343

  Fly   846 DNRVDNPTNRDI 857
            ..:..:|...|:
Zfish   344 GEKYSDPVTLDV 355

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snsNP_001036532.1 I-set 73..170 CDD:254352
Ig 76..155 CDD:299845
IG_like 186..279 CDD:214653
Ig 197..279 CDD:299845
IG_like 296..376 CDD:214653
Ig 300..361 CDD:299845
Ig 380..454 CDD:299845
IG_like 490..573 CDD:214653 20/82 (24%)
Ig 501..560 CDD:299845 15/58 (26%)
Ig 584..666 CDD:299845 21/84 (25%)
IG_like 585..666 CDD:214653 21/83 (25%)
I-set 678..767 CDD:254352 23/89 (26%)
IGc2 692..757 CDD:197706 18/64 (28%)
Ig 788..849 CDD:143165 13/64 (20%)
Ig 885..960 CDD:143165
FN3 967..1051 CDD:238020
LOC110439986XP_021333824.1 Ig_2 22..101 CDD:316418 23/89 (26%)
Ig_2 115..186 CDD:316418 23/89 (26%)
Ig_2 193..270 CDD:316418 22/86 (26%)
Ig_2 284..355 CDD:316418 16/81 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D141865at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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