DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sns and igl4v8

DIOPT Version :9

Sequence 1:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster
Sequence 2:XP_021326426.1 Gene:igl4v8 / 101884895 ZFINID:ZDB-GENE-051013-6 Length:261 Species:Danio rerio


Alignment Length:233 Identity:45/233 - (19%)
Similarity:89/233 - (38%) Gaps:68/233 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   167 KLTVISPPASIEIKGYSHNSKVEVRENQDLQLKCIVANAKPAAQ----IVWYRGNVEYKPEKRED 227
            ::||...||   :|        .:.:.:.|.:.|  ..::|.:.    :.||    :.||.:...
Zfish    47 QVTVTQSPA---VK--------SITQGETLTISC--KTSQPISGCSNCVSWY----QQKPGEAPK 94

  Fly   228 TVEESTAKRFTTTSSLKLKPGPD--DDYT------------EYTCQARHKA------------LS 266
            .:.:....|::.|.|.....|.|  .|:|            :|.|.:.|..            :|
Zfish    95 LLIKYINSRYSNTPSRFSGGGSDYGSDFTLSISGVQTEDAGDYYCLSYHSGGVYTFGGGTKLLIS 159

  Fly   267 PDMPMRATVQLSVLYPPGPPYIEGYSAGETLRRGQTVELMCRSRGGNPP-AQLIWYKNGSQIRMA 330
            ...|::.:|.|.           |.|:.::  .|.:..|:|.....:|| |::.|.::||::...
Zfish   160 TGSPVKPSVSLL-----------GSSSLQS--SGDSAALLCLLSSYSPPGAKVSWTRDGSELSEG 211

  Fly   331 YRTS------GRLS-ENIYTFTAEAGDNKARFRCEASN 361
            :.||      ||.| .::.....|..:.:.|:.|..::
Zfish   212 FLTSAESQQDGRYSCTSVLKLKREEWEKRERYACRVTH 249

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snsNP_001036532.1 I-set 73..170 CDD:254352 0/2 (0%)
Ig 76..155 CDD:299845
IG_like 186..279 CDD:214653 21/122 (17%)
Ig 197..279 CDD:299845 20/111 (18%)
IG_like 296..376 CDD:214653 17/74 (23%)
Ig 300..361 CDD:299845 17/68 (25%)
Ig 380..454 CDD:299845
IG_like 490..573 CDD:214653
Ig 501..560 CDD:299845
Ig 584..666 CDD:299845
IG_like 585..666 CDD:214653
I-set 678..767 CDD:254352
IGc2 692..757 CDD:197706
Ig 788..849 CDD:143165
Ig 885..960 CDD:143165
FN3 967..1051 CDD:238020
igl4v8XP_021326426.1 Ig 48..158 CDD:325142 22/126 (17%)
IGc1 183..251 CDD:214651 16/67 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.