DRSC/TRiP Functional Genomics Resources

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Protein Alignment sns and LOC101732679

DIOPT Version :9

Sequence 1:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster
Sequence 2:XP_017945096.1 Gene:LOC101732679 / 101732679 -ID:- Length:324 Species:Xenopus tropicalis


Alignment Length:240 Identity:46/240 - (19%)
Similarity:85/240 - (35%) Gaps:60/240 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   759 ATLNITVVVEYGTTIKSVSENIVVNPGEDAMLSCTVEGKPLTEE-HVKWERVGY----------- 811
            |:|::...|..|       .::|...|.|.:|.|::..:...|. .::|.::.|           
 Frog    21 ASLSVRFKVVSG-------PSVVATLGSDVLLPCSLTPEMNAENMEIRWFKITYQPYVHLYINGK 78

  Fly   812 -DMTVKTSTTFAN-----------GTSYLHIKDAKREDVGNFRCVADNRVDNPTNRDILLIVKFA 864
             |.|.: ...|||           |...|.|:....:|.||:.|..::     |....:..|:..
 Frog    79 DDYTAQ-MPQFANRTELLKENITRGIFLLRIRKVTAQDSGNYYCFVES-----TEHHGVATVQLQ 137

  Fly   865 PEIAKTPTLLRAASGTGERGRLPCRAQG-SPKPQFIW--RQDKKDLP-INRTYKYEVEERKIDSL 925
            .....:|.::...:    ...:.|.:.| .|:|..||  .:..|.:| :.:..|.|.....|.|.
 Frog   138 VTAVGSPLVISVIT----EDTVFCESDGWYPEPYLIWTDNEGNKVIPSMEKVLKDEKSLYHILSA 198

  Fly   926 TYESTLIVDKVAPADYGAYECVARNELGEAVET------VRLEIT 964
            .|         .|.......|...:.|.::.::      :||.:|
 Frog   199 IY---------LPPTSSNITCTVSSSLNQSKQSSTQTIEMRLPVT 234

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snsNP_001036532.1 I-set 73..170 CDD:254352
Ig 76..155 CDD:299845
IG_like 186..279 CDD:214653
Ig 197..279 CDD:299845
IG_like 296..376 CDD:214653
Ig 300..361 CDD:299845
Ig 380..454 CDD:299845
IG_like 490..573 CDD:214653
Ig 501..560 CDD:299845
Ig 584..666 CDD:299845
IG_like 585..666 CDD:214653
I-set 678..767 CDD:254352 2/7 (29%)
IGc2 692..757 CDD:197706
Ig 788..849 CDD:143165 17/84 (20%)
Ig 885..960 CDD:143165 16/84 (19%)
FN3 967..1051 CDD:238020
LOC101732679XP_017945096.1 Ig 27..139 CDD:416386 24/124 (19%)
FR1 27..49 CDD:409353 7/28 (25%)
Ig strand A 28..33 CDD:409353 2/11 (18%)
Ig strand A' 35..38 CDD:409353 1/2 (50%)
Ig strand B 41..49 CDD:409353 3/7 (43%)
CDR1 50..58 CDD:409353 1/7 (14%)
Ig strand C 58..63 CDD:409353 0/4 (0%)
FR2 59..63 CDD:409353 0/3 (0%)
CDR2 64..82 CDD:409353 2/17 (12%)
Ig strand C' 68..76 CDD:409353 0/7 (0%)
Ig strand C' 77..80 CDD:409353 0/2 (0%)
FR3 84..124 CDD:409353 10/40 (25%)
Ig strand D 91..96 CDD:409353 0/4 (0%)
Ig strand E 102..110 CDD:409353 3/7 (43%)
Ig strand F 117..125 CDD:409353 3/7 (43%)
CDR3 125..127 CDD:409353 0/6 (0%)
Ig strand G 127..139 CDD:409353 1/11 (9%)
FR4 128..139 CDD:409353 1/10 (10%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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