DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sns and xilr2

DIOPT Version :9

Sequence 1:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster
Sequence 2:XP_002938564.3 Gene:xilr2 / 100496017 XenbaseID:XB-GENE-6464634 Length:372 Species:Xenopus tropicalis


Alignment Length:289 Identity:63/289 - (21%)
Similarity:106/289 - (36%) Gaps:73/289 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   706 PTPVTYKWTKDGTTIPQDGDHRIFADGGSLNF---TRLHRDDAGIYSCSASN-----SQGGATLN 762
            |.|....:|.|    |.|    :..:|.:::|   |.........::|..:|     ||...|:|
 Frog    28 PKPSVSLFTSD----PDD----VIMEGDTISFLCETPYRNAKTFFFTCLKTNVTREQSQSKFTIN 84

  Fly   763 -ITVVVEYGTTIK---------------------------SVSENIVVNPGEDAMLSCTVEGKPL 799
             :|.....|.|.|                           ||....:|:.|:...::|:...:.:
 Frog    85 EVTQNHSGGHTCKYCDQSSCSEPSDPEHIYVRDTLPEPIISVKPRRIVHSGDSITITCSASDEDI 149

  Fly   800 TEEHVKWERVGYDMTVKTSTTFANGTSYLHIKDAKREDVGNFRC----VADNRVDNPTNRDILLI 860
            .....|    .|.: ||.:...:|.||| .|:..::|:.|.:.|    ..:|||......|.|:|
 Frog   150 IFMLYK----DYKL-VKEAAASSNTTSY-EIQSIRKENAGQYMCWYKKTKNNRVIQSQPSDPLMI 208

  Fly   861 -VKFAPEIAKTPTLLRAASGTGERGRLPCRAQGSPKPQFIWRQDKKDLPINRTYKYEVEERKIDS 924
             :|   ::.|....|..|:.......:.|.|.|:...  :|.|      :.|..|. ||:..:. 
 Frog   209 RIK---DLPKPSVSLEFANSDNGNVSIHCTAPGTYSR--LWFQ------LMRENKM-VEQETVG- 260

  Fly   925 LTYESTLIVDKVAPADYGAYECVARNELG 953
             |.|:|..:..:..    .|.|:.|..||
 Frog   261 -TKEATFTIRDLNE----KYYCIYRIRLG 284

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snsNP_001036532.1 I-set 73..170 CDD:254352
Ig 76..155 CDD:299845
IG_like 186..279 CDD:214653
Ig 197..279 CDD:299845
IG_like 296..376 CDD:214653
Ig 300..361 CDD:299845
Ig 380..454 CDD:299845
IG_like 490..573 CDD:214653
Ig 501..560 CDD:299845
Ig 584..666 CDD:299845
IG_like 585..666 CDD:214653
I-set 678..767 CDD:254352 16/69 (23%)
IGc2 692..757 CDD:197706 12/58 (21%)
Ig 788..849 CDD:143165 14/64 (22%)
Ig 885..960 CDD:143165 17/69 (25%)
FN3 967..1051 CDD:238020
xilr2XP_002938564.3 Ig 29..110 CDD:416386 18/88 (20%)
Ig strand A 30..34 CDD:409353 1/3 (33%)
Ig strand A' 41..44 CDD:409353 1/6 (17%)
Ig strand B 47..54 CDD:409353 1/6 (17%)
Ig strand C 64..69 CDD:409353 1/4 (25%)
Ig strand E 80..84 CDD:409353 1/3 (33%)
Ig strand F 92..99 CDD:409353 3/6 (50%)
Ig 122..206 CDD:416386 21/89 (24%)
Ig strand A 122..126 CDD:409353 0/3 (0%)
Ig strand A' 130..133 CDD:409353 0/2 (0%)
Ig strand B 136..143 CDD:409353 0/6 (0%)
Ig strand C 150..155 CDD:409353 0/4 (0%)
Ig strand C' 156..159 CDD:409353 1/2 (50%)
Ig strand E 170..175 CDD:409353 3/5 (60%)
Ig strand F 183..190 CDD:409353 2/6 (33%)
Ig 215..298 CDD:416386 20/85 (24%)
Ig strand A 216..220 CDD:409353 0/3 (0%)
Ig strand A' 222..225 CDD:409353 1/2 (50%)
Ig strand B 228..235 CDD:409353 0/6 (0%)
Ig strand C 244..249 CDD:409353 2/10 (20%)
Ig strand C' 257..260 CDD:409353 0/2 (0%)
Ig strand E 264..269 CDD:409353 1/4 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.