DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sns and lrig2

DIOPT Version :9

Sequence 1:NP_001036532.1 Gene:sns / 44097 FlyBaseID:FBgn0024189 Length:1542 Species:Drosophila melanogaster
Sequence 2:XP_002932176.2 Gene:lrig2 / 100494845 XenbaseID:XB-GENE-922899 Length:1078 Species:Xenopus tropicalis


Alignment Length:1369 Identity:269/1369 - (19%)
Similarity:412/1369 - (30%) Gaps:520/1369 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   258 CQARHKALSPDMPMR------------ATVQLSVLYPPGPPYIEGYSAGETLRRGQTVELMCRSR 310
            |..|..|..|..|:.            .||..|.|.|      |.||..|.  :....||.....
 Frog    41 CSRRRLARLPAAPLPEGITSLEISYNWLTVSNSSLVP------ELYSLQEV--KMNFNELTAIPH 97

  Fly   311 GGNPPAQL---------IWYKNGSQIR--MAYRTSGRLSENIYT--------------------- 343
            .|.|.|.:         |...||..::  ::..|.. ||.|:.|                     
 Frog    98 LGEPTANITLLSLVHNKIGELNGDLLQQYLSLETLD-LSSNLLTEIKSFYFPRMPLKYLNLSNNR 161

  Fly   344 -FTAEAG--DNKARFRCEASNVMSQNPLKAEVELSVLFAPTHVTVMGPTEARVGDIVPLTCTTAP 405
             .|.|||  ||.:    .:..|:..|..:..|.....|...|:..:.....|:..:..||.....
 Frog   162 IATLEAGCFDNLS----SSLLVLKLNRNRINVIQPKSFKLPHLQYLELRRNRIKIVESLTFQGLD 222

  Fly   406 SNPPAEIKWMVGGRQVRNATSKTIVSPEGGWTTTSNI-------TAVVEPNKRSLVVICHGLNMQ 463
            |....:::        ||...|.:   :|.:....|:       ..|.:.||..|    :||. .
 Frog   223 SLKSLKLQ--------RNGIVKLM---DGAFFGLDNMEQLELEYNNVTDINKGWL----YGLR-S 271

  Fly   464 LTENVVSTHTINVLYPPAPPLISGYMEGQIIPAGSVQKLLCVSSGGNPLATLTWYK--------- 519
            |.:..:|.:.::.:.|.|...              .||||.:....|.|..|..:.         
 Frog   272 LQQLYISQNAVHRISPDAWEF--------------CQKLLDLDLSYNQLNRLDDFAFVGLSSLEK 322

  Fly   520 ---NDKRINSVIRAADKSVSAEITILANVSDNQAQYRCEASN----------------------- 558
               .|.|||.:.....|.: |.:.:| ::.:|:..:..|.||                       
 Frog   323 INLGDNRINHIAEGVFKGL-ANLLVL-DLRNNEISWAIEDSNEVFAGLSRLHTLILQGNKIKSIT 385

  Fly   559 --------SATEIPLFQSTTLSVHFAPETVKIRIEPEELRPGMEATIICDSSSSNPPAKLSWWKD 615
                    |...:.|..:..|||.   |.....::.:||... .:.::||       .:|.|:..
 Frog   386 MKAFTGLDSLQHLDLSNNAILSVQ---ENGFSFMKLQELILN-TSNLLCD-------CQLKWFPH 439

  Fly   616 GIPIEGINNTSKPGLWGGTVSTLEFRVNVTQEMNGQVYTCQSANEALQRSA----HEAVSLDVLY 676
            .:...|.:               :| |||         :|...|....||.    .|....|...
 Frog   440 WLNDNGFH---------------QF-VNV---------SCAHPNWLAGRSPLSVDAEDFICDNFP 479

  Fly   677 RPKFVPPPSSTAVGVEGESLQVSLQTRA---NPTPVTYKWTKDGTTIPQDGDHRIFADGGSLNFT 738
            :|:....|.:| |.::|  :.|||...|   :.||::..|.|||         .:..|....||.
 Frog   480 KPQIKLQPETT-VALKG--MNVSLTCAAASSSDTPMSTAWRKDG---------EVLYDAEVENFA 532

  Fly   739 RLHR-------------------DDAGIYSCSASNSQGGATLNITVVVEYGTTIK-SVSE----- 778
            |.|:                   .|.|.|.|..:|..|.         .|.:..| :|:|     
 Frog   533 RYHKHGIELIEYITVLHLFNVNFTDEGKYQCVITNHFGS---------NYSSKAKLTVNEMPSFL 588

  Fly   779 ----NIVVNPGEDAMLSCTVEGKPLTEEHVKWERVGYDMTVKTSTTFANGTSY------------ 827
                ::.:..|..|.|.|..||.|  ...:.|::.|             ||.:            
 Frog   589 KTPMDLTIRTGAMARLECAAEGHP--PPQIAWQKDG-------------GTDFPAARERRMHVMP 638

  Fly   828 ----LHIKDAKREDVGNFRCVADNRVDNPTNRDILLIVKFAPEIAKTPTLLRAAS----GTGERG 884
                |.|.:.|.||:|.:.|.|.|...:.:....|.::       :||:.:|...    ..||..
 Frog   639 EDEVLFIVNVKIEDMGLYSCTAQNAAGSISANVTLTVL-------ETPSFVRPLEDRTVARGETA 696

  Fly   885 RLPCRAQGSPKPQFIWRQDKKDLPINRTYKYEVEERKIDSLTYESTLIVDKVAPADYGAYECVAR 949
            .|.|.|.|||.|:..|.:|  |.|:      :|.||...:...:..:||| ..|.|.|.|.|...
 Frog   697 VLHCIAGGSPAPRLNWTKD--DGPL------QVTERHFFAAANQLLIIVD-AGPEDAGKYTCSMS 752

  Fly   950 NELGEAVETVRLEITSQPDPPLSLNILNVTHDTVTLAWTPGFDGGLKASYRVRYRMADREQYKYI 1014
            |.||.....:.|.:.|.|:...|.||              |::.                     
 Frog   753 NTLGTERGHINLHVLSSPNCDSSQNI--------------GYEE--------------------- 782

  Fly  1015 DGLPNSHKLTIGGLRMNTLYLFSVMSWNELGQSSYLPDLARAETKEAPPPSHPASSLGGGPPTTS 1079
            ||                        |                                   || 
 Frog   783 DG------------------------W-----------------------------------TT- 787

  Fly  1080 QTPLGGTSGMLLVGVGAGIVVVLLNVFVIGCCLHKRNEKRLKRGLELMPAELTEDSSNTPNLVII 1144
                            .|||::     |:.||                               ::
 Frog   788 ----------------VGIVII-----VVVCC-------------------------------VV 800

  Fly  1145 GISLAAFGFLLVNASLVAWFFV--HQRRKKVAETTNQPAKTATIEMYAPSSYNDTVTGETLSSVS 1207
            |.||             .|..|  |.|||     :...:.|.|.:|..|:.....::.:  .::|
 Frog   801 GTSL-------------VWVIVIYHMRRK-----SEDYSITNTEDMNLPADIPSYLSSQ--GTLS 845

  Fly  1208 EKSESYSNE--GSSQ---PEYIDEVRKKAASTYLVEGS--DM----PPPRYQKDGTLPVIYPNNV 1261
            |..|.|||.  ||.|   |...:.|.|.....|:..||  ||    .|..:...|.:|.:|    
 Frog   846 EPPEGYSNSEAGSHQQLMPPANNCVHKGTDGLYVDTGSEADMDILNTPFSHNMQGKMPHLY---- 906

  Fly  1262 VNACTLPHPRHNNGSAAIHMTRDDQMLISKGVYIPSPSPAPPPDGSYYNMN-SDRYLSYPPMEYP 1325
                      ..:|:.....||:       |:.||:.:|.......|.|.| ..|...:.|..|.
 Frog   907 ----------SGHGTILPTDTRE-------GLPIPAAAPLMICSDCYDNANIYSRTREFYPYTYI 954

  Fly  1326 AALD-----FTAQPMPMAHLQPMTVTSLATNGGPTLIGNGSVAAVAGGSGTLRRGIL-----RGV 1380
            ...|     ..|| :|...|....|.| ..:...:|..:..:.:......|.:|.:.     .|:
 Frog   955 TEEDQILPSLIAQ-IPKETLYQHEVLS-ERDMRASLTSHDRLDSTNPSCDTFQRPLCGFKKEPGL 1017

  Fly  1381 VGVPQPDVTHHTSTVGGSPMQMLHDLHPVNLSASTLTTSTTLNGSLPTATATLPR-QPHGILKDP 1444
            ...|.|...|.:..:.|.|  :|.:                 .|.:.|....||| .|....:|.
 Frog  1018 TAAPHPHFCHLSVPIPGKP--LLRN-----------------EGCIKTEEVGLPRPSPRSCDQDN 1063

  Fly  1445 NRNK 1448
            :.|:
 Frog  1064 DLNR 1067

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snsNP_001036532.1 I-set 73..170 CDD:254352
Ig 76..155 CDD:299845
IG_like 186..279 CDD:214653 7/32 (22%)
Ig 197..279 CDD:299845 7/32 (22%)
IG_like 296..376 CDD:214653 22/114 (19%)
Ig 300..361 CDD:299845 19/95 (20%)
Ig 380..454 CDD:299845 13/80 (16%)
IG_like 490..573 CDD:214653 21/125 (17%)
Ig 501..560 CDD:299845 17/101 (17%)
Ig 584..666 CDD:299845 14/81 (17%)
IG_like 585..666 CDD:214653 14/80 (18%)
I-set 678..767 CDD:254352 26/110 (24%)
IGc2 692..757 CDD:197706 21/86 (24%)
Ig 788..849 CDD:143165 19/76 (25%)
Ig 885..960 CDD:143165 25/74 (34%)
FN3 967..1051 CDD:238020 8/83 (10%)
lrig2XP_002932176.2 PRK15370 <37..>165 CDD:185268 27/132 (20%)
leucine-rich repeat 37..56 CDD:275380 5/14 (36%)
leucine-rich repeat 58..81 CDD:275380 6/28 (21%)
leucine-rich repeat 82..104 CDD:275380 5/23 (22%)
leucine-rich repeat 105..128 CDD:275378 3/22 (14%)
LRR 127..>384 CDD:227223 53/293 (18%)
leucine-rich repeat 129..148 CDD:275380 5/19 (26%)
leucine-rich repeat 152..175 CDD:275380 6/26 (23%)
leucine-rich repeat 176..199 CDD:275380 4/22 (18%)
leucine-rich repeat 200..223 CDD:275380 3/22 (14%)
leucine-rich repeat 224..247 CDD:275380 4/33 (12%)
leucine-rich repeat 248..271 CDD:275380 6/27 (22%)
leucine-rich repeat 272..295 CDD:275380 4/36 (11%)
leucine-rich repeat 296..319 CDD:275380 5/22 (23%)
leucine-rich repeat 320..343 CDD:275380 5/23 (22%)
leucine-rich repeat 344..368 CDD:275380 5/24 (21%)
LRR_8 370..429 CDD:338972 8/62 (13%)
leucine-rich repeat 371..394 CDD:275380 0/22 (0%)
leucine-rich repeat 395..417 CDD:275380 5/24 (21%)
LRRCT 428..476 CDD:214507 14/79 (18%)
Ig 485..581 CDD:386229 27/116 (23%)
Ig_1 602..676 CDD:143240 20/88 (23%)
I-set 679..766 CDD:369462 30/95 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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